Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1958

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10325 and 10326 are separated by 722 nucleotides10326 and 10327 are separated by 675 nucleotides mRNA_1957: 10325 - K02984 RP-S3Ae, RPS3A small subunit ribosomal protein S3Ae, at 607,981 to 609,583 10325 mRNA_1958: 10326 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 610,306 to 612,524 10326 mRNA_1959: 10327 - Hypothetical Protein, at 613,200 to 613,373 10327

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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609,854 - +3.1
611,195 + 10326 mRNA_1958 0.40 -1.2
611,218 + 10326 mRNA_1958 0.41 +0.4
611,304 + 10326 mRNA_1958 0.45 -0.0
611,585 - 10326 mRNA_1958 0.58 -0.1
611,654 - 10326 mRNA_1958 0.61 +1.3
611,859 + 10326 mRNA_1958 0.70 +0.8
612,072 - 10326 mRNA_1958 0.80 +1.2
612,347 - -0.5
612,365 + +2.6
612,645 - -0.1
612,667 - -0.2
612,806 + +0.0
612,821 + -0.4
613,127 + +1.4
613,434 - +0.6
613,443 + +0.5

Or see this region's nucleotide sequence