Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2142

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10510 and 10511 are separated by 347 nucleotides mRNA_2142: 10510 - Hypothetical Protein, at 179,044 to 180,564 10510 mRNA_2143: 10511 - HMMPfam-F-box domain-PF00646,ProSiteProfiles-F-box domain profile.-PS50181,SMART-A Receptor for Ubiquitination Targets-SM00256,SUPERFAMILY--SSF81383, at 180,912 to 181,824 10511

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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178,189 + +1.4
178,428 - +2.3
178,468 - +0.0
178,518 - -0.4
178,934 + +1.4
178,936 - -2.2
179,026 + -0.1
179,027 - -0.2
179,150 - +1.4
179,150 - +0.1
179,342 + 10510 mRNA_2142 0.20 -1.0
179,344 - 10510 mRNA_2142 0.20 -0.9
179,373 - 10510 mRNA_2142 0.22 -0.6
179,373 - 10510 mRNA_2142 0.22 +0.6
179,787 - 10510 mRNA_2142 0.49 -1.1
180,045 - 10510 mRNA_2142 0.66 -1.9
180,054 + 10510 mRNA_2142 0.66 +0.7
180,093 + 10510 mRNA_2142 0.69 +1.3
180,201 - 10510 mRNA_2142 0.76 +0.0
180,327 - 10510 mRNA_2142 0.84 +0.3
180,932 + +0.8
180,977 - -0.4
180,981 - -0.4
181,178 - 10511 mRNA_2143 0.29 +0.2
181,179 - 10511 mRNA_2143 0.29 -0.0
181,185 + 10511 mRNA_2143 0.30 +0.2
181,197 - 10511 mRNA_2143 0.31 +1.4
181,215 - 10511 mRNA_2143 0.33 -0.4
181,254 - 10511 mRNA_2143 0.37 +0.4
181,309 + 10511 mRNA_2143 0.43 -1.6
181,315 + 10511 mRNA_2143 0.44 +0.8
181,323 + 10511 mRNA_2143 0.45 -0.0
181,332 - 10511 mRNA_2143 0.46 -2.6
181,394 - 10511 mRNA_2143 0.53 +1.1

Or see this region's nucleotide sequence