Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2154

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10521 and 10522 are separated by 234 nucleotides10522 and 10523 are separated by 359 nucleotides mRNA_2153: 10521 - K14003 PREB, SEC12 prolactin regulatory element-binding protein, at 200,588 to 202,509 10521 mRNA_2154: 10522 - KOG2689 Predicted ubiquitin regulatory protein, at 202,744 to 204,130 10522 mRNA_2155: 10523 - Hypothetical Protein, at 204,490 to 205,403 10523

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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202,526 - -0.9
202,554 + +1.7
202,590 + +0.2
202,636 - +0.8
202,680 - +0.3
202,685 - +2.4
202,685 + +1.1
203,123 - 10522 mRNA_2154 0.27 +0.2
203,132 - 10522 mRNA_2154 0.28 +1.1
203,282 - 10522 mRNA_2154 0.39 -0.1
203,402 + 10522 mRNA_2154 0.47 +1.7
203,528 - 10522 mRNA_2154 0.57 +1.9
203,603 - 10522 mRNA_2154 0.62 +0.6
203,841 + 10522 mRNA_2154 0.79 -0.5
203,911 + 10522 mRNA_2154 0.84 +0.6
204,211 - +1.3
204,304 + -1.5
204,319 - -0.6
204,599 + 10523 mRNA_2155 0.12 +0.5
204,669 + 10523 mRNA_2155 0.20 +1.1
204,707 + 10523 mRNA_2155 0.24 +0.5
204,711 + 10523 mRNA_2155 0.24 +1.9
204,739 - 10523 mRNA_2155 0.27 +0.5
204,854 - 10523 mRNA_2155 0.40 +1.7
205,122 + 10523 mRNA_2155 0.69 -0.4

Or see this region's nucleotide sequence