Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2156

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10523 and 10524 are separated by 536 nucleotides10524 and 10525 are separated by 443 nucleotides mRNA_2155: 10523 - Hypothetical Protein, at 204,490 to 205,403 10523 mRNA_2156: 10524 - Hypothetical Protein, at 205,940 to 207,081 10524 mRNA_2157: 10525 - Hypothetical Protein, at 207,525 to 208,737 10525

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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205,122 + 10523 mRNA_2155 0.69 -0.4
205,131 - 10523 mRNA_2155 0.70 -0.5
205,178 + 10523 mRNA_2155 0.75 +0.6
205,210 + 10523 mRNA_2155 0.79 +0.2
205,302 + 10523 mRNA_2155 0.89 +0.9
205,453 - -2.6
205,556 + +1.9
205,635 + +0.3
205,705 - +2.7
205,740 + -0.9
205,740 + +0.0
205,749 + +0.7
206,047 + -0.9
206,450 - 10524 mRNA_2156 0.45 +0.4
206,570 - 10524 mRNA_2156 0.55 -0.3
206,632 + 10524 mRNA_2156 0.61 -0.2
206,739 - 10524 mRNA_2156 0.70 +0.9
206,764 - 10524 mRNA_2156 0.72 +0.0
206,895 + 10524 mRNA_2156 0.84 -0.1
206,900 + 10524 mRNA_2156 0.84 +0.8
206,996 - +1.8
207,002 - +0.1
207,007 - +0.3
207,026 + -0.3
207,046 - +2.5
207,058 + +1.0
207,061 + +0.5
207,081 - +0.8
207,082 - +3.1
207,096 - +1.8
207,100 - -0.2
207,101 + +1.8
207,109 + +0.0
207,109 + +0.2
207,112 - +0.2
207,115 - +0.7
207,123 - +1.6
207,131 - +0.0
207,134 - +0.2
207,150 - -2.2
207,153 + +1.7
207,154 - +0.5
207,163 - -0.9
207,171 + -0.4
207,277 - -0.1
207,337 + -0.1
208,045 + 10525 mRNA_2157 0.43 -0.0
208,075 - 10525 mRNA_2157 0.45 +0.3

Or see this region's nucleotide sequence