Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2181

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt mRNA_2181: 10549 - K11423 SETD2, SET2 histone-lysine N-methyltransferase SETD2, at 278,274 to 281,386 10549

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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277,633 + -0.2
277,642 - +0.4
277,650 - +0.2
277,665 + +0.5
278,073 + +0.1
278,075 + +0.0
278,085 + +0.0
278,129 + +0.2
278,383 - +0.8
278,385 - -0.7
278,490 + +2.9
278,510 - -0.0
278,516 + -0.8
278,528 - +2.2
278,531 - +0.0
278,784 - 10549 mRNA_2181 0.16 +1.4
278,841 + 10549 mRNA_2181 0.18 -1.1
279,128 - 10549 mRNA_2181 0.27 +0.1
279,249 + 10549 mRNA_2181 0.31 +1.9
279,449 - 10549 mRNA_2181 0.38 +1.5
279,515 - 10549 mRNA_2181 0.40 +0.8
279,528 + 10549 mRNA_2181 0.40 +1.0
279,994 - 10549 mRNA_2181 0.55 +0.2
280,115 - 10549 mRNA_2181 0.59 -1.0
280,144 + 10549 mRNA_2181 0.60 +0.9
280,165 + 10549 mRNA_2181 0.61 +0.3
280,173 - 10549 mRNA_2181 0.61 -0.2
280,400 - 10549 mRNA_2181 0.68 -0.1
280,556 - 10549 mRNA_2181 0.73 +0.1
280,579 + 10549 mRNA_2181 0.74 -1.2
280,871 - 10549 mRNA_2181 0.83 +0.6
281,110 + +0.8
281,340 + -1.3
281,364 - +0.0
281,396 - +0.7
281,408 + +0.4
281,418 - +2.4
281,451 - +1.7
281,469 + +0.8
281,476 - +2.8
281,479 + +1.4
281,486 - -0.0
281,488 + +0.3
281,498 + -0.5
281,499 + -0.9
281,515 - -0.0
281,748 + +0.9
281,795 - +0.1
281,801 - +0.5
281,924 - +0.3
282,256 + +1.4
282,373 - +0.1
282,379 + +0.1

Or see this region's nucleotide sequence