Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2195

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10563 and 10564 are separated by 316 nucleotides mRNA_2195: 10563 - HMMPfam-Subtilase family-PF00082,HMMPfam-PA domain-PF02225,HMMPfam-Fn3-like domain (DUF1034)-PF06280,PRINTS-Subtilisin serine protease family (S8) signature-PR00723,ProSitePatterns-Serine proteases, subtilase family, aspartic acid active site.-PS00136,ProSitePatterns-Serine proteases, subtilase family, histidine active site.-PS00137,SUPERFAMILY--SSF52025,SUPERFAMILY--SSF52743, at 319,466 to 323,008 10563 mRNA_2196: 10564 - HMMPfam-Bromodomain associated-PF07524, at 323,325 to 326,120 10564

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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318,739 - -0.3
318,774 + -0.6
318,978 + +0.0
319,016 + -0.4
319,059 + +1.1
319,069 + +0.5
319,172 + +3.0
319,175 - -1.1
319,213 - +0.4
319,261 - +0.7
319,268 - -1.1
319,277 + +1.1
319,286 - +1.1
319,321 - +0.6
319,347 - +1.5
319,357 + -1.2
319,369 + -0.5
319,401 + -0.6
319,403 - -0.5
319,481 + +0.4
319,628 - +0.7
319,790 + +1.5
319,911 + 10563 mRNA_2195 0.13 +0.0
319,941 + 10563 mRNA_2195 0.13 -0.3
319,965 + 10563 mRNA_2195 0.14 +1.2
320,051 - 10563 mRNA_2195 0.17 +1.6
320,089 + 10563 mRNA_2195 0.18 +0.4
320,243 + 10563 mRNA_2195 0.22 -0.4
320,409 + 10563 mRNA_2195 0.27 +0.6
320,526 - 10563 mRNA_2195 0.30 +2.2
320,577 - 10563 mRNA_2195 0.31 -0.2
320,627 + 10563 mRNA_2195 0.33 +0.4
320,644 - 10563 mRNA_2195 0.33 +0.4
320,700 - 10563 mRNA_2195 0.35 -0.3
320,700 + 10563 mRNA_2195 0.35 +2.3
320,802 + 10563 mRNA_2195 0.38 +0.4
320,811 + 10563 mRNA_2195 0.38 +0.7
320,870 - 10563 mRNA_2195 0.40 -1.0
321,251 - 10563 mRNA_2195 0.50 +1.0
321,261 + 10563 mRNA_2195 0.51 -0.2
321,271 + 10563 mRNA_2195 0.51 +0.0
321,390 + 10563 mRNA_2195 0.54 +0.2
321,411 + 10563 mRNA_2195 0.55 +0.1
321,569 + 10563 mRNA_2195 0.59 +0.3
321,588 - 10563 mRNA_2195 0.60 +0.3
321,762 - 10563 mRNA_2195 0.65 +2.5
321,854 + 10563 mRNA_2195 0.67 -0.2
321,877 + 10563 mRNA_2195 0.68 -1.0
321,877 + 10563 mRNA_2195 0.68 +0.6
321,880 + 10563 mRNA_2195 0.68 -0.1
321,883 - 10563 mRNA_2195 0.68 -2.0
321,917 - 10563 mRNA_2195 0.69 -0.1
321,988 - 10563 mRNA_2195 0.71 +0.7
322,060 + 10563 mRNA_2195 0.73 +0.5
322,064 + 10563 mRNA_2195 0.73 -0.1
322,151 - 10563 mRNA_2195 0.76 +0.1
322,222 - 10563 mRNA_2195 0.78 +2.0
322,313 - 10563 mRNA_2195 0.80 +0.4
322,331 - 10563 mRNA_2195 0.81 -0.1
322,463 + 10563 mRNA_2195 0.85 +0.1
322,578 + 10563 mRNA_2195 0.88 +0.3
322,897 - +1.5
323,314 + -0.5
323,318 - +0.8
323,445 + +0.7
323,627 + 10564 mRNA_2196 0.11 +0.8
323,823 - 10564 mRNA_2196 0.18 +1.1
323,843 - 10564 mRNA_2196 0.19 +0.2

Or see this region's nucleotide sequence