Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2236

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10603 and 10604 are separated by 105 nucleotides10604 and 10605 are separated by 577 nucleotides mRNA_2235: 10603 - K11843 USP14, UBP6 ubiquitin carboxyl-terminal hydrolase 14, at 430,392 to 432,550 10603 mRNA_2236: 10604 - KOG3098 Uncharacterized conserved protein, at 432,656 to 434,707 10604 mRNA_2237: 10605 - KOG1794 N-Acetylglucosamine kinase, at 435,285 to 436,613 10605

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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432,313 + 10603 mRNA_2235 0.89 +1.6
432,792 - -0.1
432,861 + -0.2
433,025 - 10604 mRNA_2236 0.18 +1.4
433,062 + 10604 mRNA_2236 0.20 +0.4
433,586 - 10604 mRNA_2236 0.45 +1.6
433,736 - 10604 mRNA_2236 0.53 -0.6
433,738 + 10604 mRNA_2236 0.53 +0.4
433,858 + 10604 mRNA_2236 0.59 +1.1
434,165 - 10604 mRNA_2236 0.74 -1.2
434,327 - 10604 mRNA_2236 0.81 +1.1
434,454 - 10604 mRNA_2236 0.88 +0.4
434,463 + 10604 mRNA_2236 0.88 +0.7
434,577 - +0.5
434,581 - +0.7
434,653 + -0.6
434,718 + -0.0
434,739 + -0.4
434,746 - -0.3
434,757 + +0.1
434,774 + +1.0
434,775 + +0.0
434,777 + -0.0
434,798 + +0.8
434,800 - +1.4
434,808 + +0.8
434,821 + +1.8
434,822 + +0.0
434,831 + +1.2
434,838 - +0.2
434,846 - +0.2
434,850 - -0.7
434,851 + -1.1
434,863 - +0.1
434,867 - +2.1
434,871 + +1.0
434,873 + -1.4
434,874 - +0.5
434,875 - -0.5
434,877 + +1.2
434,883 - +0.6
434,886 - -0.7
434,893 - +0.1
434,898 - +0.3
434,900 - -1.2
434,902 + +0.1
434,904 - +0.1
434,910 - -1.6
434,915 + -0.6
434,921 + +1.9
434,924 - +0.1
434,925 + +0.5
434,929 - -0.1
434,929 + +0.8
434,934 - +0.7
434,935 - +0.4
434,935 + +1.0
434,936 - +1.2
434,938 - +0.8
434,942 - +0.6
434,943 - +1.3
434,947 + +0.3
434,950 - -1.2
434,953 - +0.2
434,966 + +0.6
434,989 - +0.1
434,998 - +0.4
435,070 - -1.4
435,080 + -0.1
435,095 - -0.9
435,098 - -0.6
435,407 + +0.9

Or see this region's nucleotide sequence