Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2242

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10609 and 10610 are separated by 466 nucleotides10610 and 10611 are separated by 482 nucleotides mRNA_2241: 10609 - K12572 PAN3 PAB-dependent poly(A)-specific ribonuclease subunit 3, at 444,470 to 447,596 10609 mRNA_2242: 10610 - Hypothetical Protein, at 448,063 to 449,685 10610 mRNA_2243: 10611 - SUPERFAMILY--SSF52266, at 450,168 to 452,098 10611

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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447,221 - 10609 mRNA_2241 0.88 -0.1
447,245 - 10609 mRNA_2241 0.89 +0.2
447,345 - -0.3
447,532 - -0.4
447,548 - -3.9
447,585 + -1.4
447,666 + +0.6
447,666 + -1.5
447,667 - +0.4
447,669 + +2.4
447,671 - -0.3
447,683 - +0.8
447,689 - +1.8
447,800 + +0.7
447,808 + +1.0
447,811 - +0.7
447,840 - +0.5
447,884 + -0.8
447,892 + +0.4
447,928 + +1.6
448,015 - +1.2
448,031 - +0.4
448,043 - +0.2
448,044 + +0.2
448,044 - +0.1
448,053 - -1.1
448,073 + +1.0
448,183 + +1.6
448,184 + +0.8
448,210 + +0.9
448,217 + +0.4
448,240 - 10610 mRNA_2242 0.11 +0.7
448,247 - 10610 mRNA_2242 0.11 +0.5
448,329 - 10610 mRNA_2242 0.16 +0.4
448,335 + 10610 mRNA_2242 0.17 +0.5
448,339 - 10610 mRNA_2242 0.17 +1.3
448,353 + 10610 mRNA_2242 0.18 -0.2
448,353 + 10610 mRNA_2242 0.18 +0.6
448,358 - 10610 mRNA_2242 0.18 +0.8
448,364 - 10610 mRNA_2242 0.19 +1.9
448,384 + 10610 mRNA_2242 0.20 +1.9
448,403 - 10610 mRNA_2242 0.21 -0.3
448,446 + 10610 mRNA_2242 0.24 +0.1
448,478 + 10610 mRNA_2242 0.26 -0.9
448,483 - 10610 mRNA_2242 0.26 -0.1
448,494 + 10610 mRNA_2242 0.27 -1.1
448,497 - 10610 mRNA_2242 0.27 -0.9
448,502 + 10610 mRNA_2242 0.27 -1.2
448,507 + 10610 mRNA_2242 0.27 +0.1
448,609 - 10610 mRNA_2242 0.34 +0.5
448,611 - 10610 mRNA_2242 0.34 -0.5
448,623 + 10610 mRNA_2242 0.35 +0.4
448,640 + 10610 mRNA_2242 0.36 +3.5
448,647 - 10610 mRNA_2242 0.36 +1.0
448,656 + 10610 mRNA_2242 0.37 +0.4
448,662 - 10610 mRNA_2242 0.37 -1.1
448,851 + 10610 mRNA_2242 0.49 +0.5
448,940 + 10610 mRNA_2242 0.54 +0.6
448,967 - 10610 mRNA_2242 0.56 -0.1
449,089 + 10610 mRNA_2242 0.63 +0.7
449,091 - 10610 mRNA_2242 0.63 -0.5
449,101 + 10610 mRNA_2242 0.64 +1.5
449,241 + 10610 mRNA_2242 0.73 +1.0
449,423 - 10610 mRNA_2242 0.84 +0.1
449,680 + +1.6
449,698 + +0.5
449,833 + -0.3
449,996 + -1.4
450,014 - -0.2
450,306 + +1.1
450,420 + 10611 mRNA_2243 0.13 -1.0
450,572 + 10611 mRNA_2243 0.21 +0.5

Or see this region's nucleotide sequence