Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2261

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10628 and 10629 are separated by 349 nucleotides10629 and 10630 are separated by 180 nucleotides mRNA_2260: 10628 - K03027 RPC40, POLR1C DNA-directed RNA polymerases I and III subunit RPAC1, at 479,323 to 480,652 10628 mRNA_2261: 10629 - K12670 WBP1 oligosaccharyltransferase complex subunit beta, at 481,002 to 482,394 10629 mRNA_2262: 10630 - KOG0899 Mitochondrial/chloroplast ribosomal protein S19, at 482,575 to 483,044 10630

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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480,724 - +0.1
480,739 - +0.3
480,741 - -2.8
480,829 - +0.2
480,836 + -0.1
480,865 + +0.7
480,871 - +0.9
480,876 - -0.1
480,877 + +1.0
480,891 - +0.5
480,899 + -0.3
480,900 + +1.9
482,476 + -0.8
482,503 + +2.1
482,612 - +0.9
482,644 - 10630 mRNA_2262 0.15 +1.2
483,081 - -0.2
483,091 + -0.9
483,092 - +1.6
483,099 - +2.7
483,101 - -2.5
483,101 - -1.2
483,113 - +0.5
483,115 - -0.5
483,214 - +0.4

Or see this region's nucleotide sequence