Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2269

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10636 and 10637 are separated by 568 nucleotides10637 and 10638 are separated by 455 nucleotides mRNA_2268: 10636 - K11215 STE12 transcription factor STE12, at 490,121 to 491,043 10636 mRNA_2269: 10637 - Hypothetical Protein, at 491,612 to 491,803 10637 mRNA_2270: 10638 - K19833 CLA4 serine/threonine-protein kinase CLA4, at 492,259 to 494,809 10638

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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490,649 - 10636 mRNA_2268 0.57 -0.4
490,658 + 10636 mRNA_2268 0.58 +2.5
490,790 - 10636 mRNA_2268 0.72 +1.3
490,798 - 10636 mRNA_2268 0.73 -1.7
490,850 - 10636 mRNA_2268 0.79 +0.2
490,932 + 10636 mRNA_2268 0.88 +2.2
490,944 - 10636 mRNA_2268 0.89 +0.4
490,952 - -0.0
490,965 + +0.3
491,104 - -0.0
491,104 - -0.4
491,105 + +0.5
491,109 + -0.0
491,117 - -0.0
491,118 + -0.9
491,120 + -0.2
491,124 - +1.3
491,124 - +0.7
491,135 + +1.3
491,137 - +1.9
491,138 - -0.8
491,139 + +0.2
491,139 + +2.0
491,139 - +1.5
491,140 - -1.7
491,141 - +0.1
491,143 + +0.9
491,144 - -0.2
491,144 - -0.2
491,146 + +1.1
491,155 + -1.1
491,158 - -0.1
491,158 + -1.3
491,162 + -0.2
491,201 + +0.9
491,203 + +0.4
491,208 + -0.9
491,209 + +0.8
491,218 - -0.2
491,218 + +0.3
491,219 + +1.7
491,220 - +0.9
491,220 + -0.4
491,222 - +0.4
491,228 + +0.2
491,321 - -0.1
491,350 - +1.3
491,377 + +0.6
491,399 + +0.8
491,534 - +0.3
491,535 + +0.8
491,552 + -0.7

Or see this region's nucleotide sequence