Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2283

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10651 and 10652 are separated by 591 nucleotides mRNA_2283: 10651 - KOG1674 Cyclin, at 524,604 to 524,992 10651 mRNA_2284: 10652 - Hypothetical Protein, at 525,584 to 526,132 10652

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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523,659 - +0.3
523,959 - +0.4
524,081 + -0.6
524,309 + +0.5
524,722 + 10651 mRNA_2283 0.30 -0.2
524,847 + 10651 mRNA_2283 0.62 +0.1
524,853 + 10651 mRNA_2283 0.64 +0.3
525,090 + +0.0
525,140 + +1.1
525,271 - +1.1
525,410 + -0.2
525,575 + +1.9
525,576 - -0.2
525,589 + -1.0
525,652 - 10652 mRNA_2284 0.12 +2.0
525,665 - 10652 mRNA_2284 0.15 +0.5
525,689 + 10652 mRNA_2284 0.19 -0.1
525,691 + 10652 mRNA_2284 0.19 -1.1
525,713 - 10652 mRNA_2284 0.23 -0.9
525,717 + 10652 mRNA_2284 0.24 +0.1
525,719 + 10652 mRNA_2284 0.25 -0.1
525,722 + 10652 mRNA_2284 0.25 -0.3
525,727 + 10652 mRNA_2284 0.26 +0.2
525,732 + 10652 mRNA_2284 0.27 +0.2
525,747 + 10652 mRNA_2284 0.30 +0.3
525,751 + 10652 mRNA_2284 0.30 +1.2
525,753 - 10652 mRNA_2284 0.31 +0.4
525,754 - 10652 mRNA_2284 0.31 +0.4
525,766 - 10652 mRNA_2284 0.33 +1.5
525,767 + 10652 mRNA_2284 0.33 +0.8
525,773 + 10652 mRNA_2284 0.34 -0.6
525,797 + 10652 mRNA_2284 0.39 +0.5
525,806 - 10652 mRNA_2284 0.40 -0.7
525,833 + 10652 mRNA_2284 0.45 +1.8
525,833 + 10652 mRNA_2284 0.45 +1.3
525,847 + 10652 mRNA_2284 0.48 +1.5
525,855 + 10652 mRNA_2284 0.49 -0.6
525,857 - 10652 mRNA_2284 0.50 +1.1
525,862 + 10652 mRNA_2284 0.51 +1.3
525,864 + 10652 mRNA_2284 0.51 -2.0
525,871 - 10652 mRNA_2284 0.52 +0.5
525,876 + 10652 mRNA_2284 0.53 +0.9
525,878 - 10652 mRNA_2284 0.54 -1.2
525,971 - 10652 mRNA_2284 0.70 -0.8
525,977 - 10652 mRNA_2284 0.72 +1.0
525,987 + 10652 mRNA_2284 0.73 +0.2

Or see this region's nucleotide sequence