Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2295

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10662 and 10663 are separated by 123 nucleotides10663 and 10664 are separated by 77 nucleotides mRNA_2294: 10662 - KOG4131 Ngg1-interacting factor 3 protein NIF3L1, at 547,521 to 548,816 10662 mRNA_2295: 10663 - BLAST CsbD-like [Xanthophyllomyces dendrorhous], at 548,940 to 549,587 10663 mRNA_2296: 10664 - K05289 GAA1 glycosylphosphatidylinositol transamidase, at 549,665 to 551,990 10664

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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548,063 + 10662 mRNA_2294 0.42 -0.1
548,318 - 10662 mRNA_2294 0.61 +0.4
548,935 + -0.2
549,313 + 10663 mRNA_2295 0.58 +0.4
549,323 + 10663 mRNA_2295 0.59 +2.1
549,325 - 10663 mRNA_2295 0.59 +0.1
549,335 + 10663 mRNA_2295 0.61 +1.1
549,335 - 10663 mRNA_2295 0.61 -0.6
549,338 + 10663 mRNA_2295 0.61 +1.4
549,454 - 10663 mRNA_2295 0.79 +0.1
549,488 + 10663 mRNA_2295 0.85 -0.1
549,505 - 10663 mRNA_2295 0.87 +0.3
549,635 - -2.1

Or see this region's nucleotide sequence