Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2305

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10672 and 10673 are separated by 218 nucleotides10673 and 10674 are separated by 381 nucleotides mRNA_2304: 10672 - Hypothetical Protein, at 567,046 to 568,484 10672 mRNA_2305: 10673 - K01082 cysQ, MET22, BPNT1 3'(2'), 5'-bisphosphate nucleotidase, at 568,703 to 570,355 10673 mRNA_2306: 10674 - HMMPfam-ATP synthase complex subunit h-PF10775, at 570,737 to 571,864 10674

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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567,962 - 10672 mRNA_2304 0.64 -0.8
568,234 + 10672 mRNA_2304 0.83 +1.1
568,266 - 10672 mRNA_2304 0.85 +0.5
568,269 + 10672 mRNA_2304 0.85 -0.3
568,381 + +0.5
568,390 + +1.0
568,391 - +1.2
568,398 - -1.0
568,399 + +2.2
568,405 - +0.1
568,406 + -0.7
568,415 + -0.4
568,418 + -0.5
568,441 + +0.2
568,561 + +0.6
568,582 - -0.1
568,586 - -0.5
568,586 - -1.1
568,599 + +0.3
568,606 - +0.4
568,615 + +0.4
568,619 - -0.1
568,712 - +1.0
570,463 - +1.9
570,473 + -1.0
570,478 + +1.1
570,490 + +0.0
570,492 - -0.3
570,505 - +2.2
570,592 - -0.2
570,618 + -0.3
570,623 - +0.7

Or see this region's nucleotide sequence