Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2332

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10699 and 10700 are separated by 860 nucleotides10700 and 10701 are separated by 663 nucleotides mRNA_2331: 10699 - HMMPfam-Amidohydrolase family-PF07969,SUPERFAMILY--SSF51338,SUPERFAMILY--SSF51556, at 634,514 to 637,179 10699 mRNA_2332: 10700 - KOG1134 Uncharacterized conserved protein, at 638,040 to 641,999 10700 mRNA_2333: 10701 - KOG1159 NADP-dependent flavoprotein reductase, at 642,663 to 645,138 10701

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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637,096 + +0.2
637,191 - -0.6
637,227 - +1.9
637,227 + -0.4
637,228 + +0.7
637,242 - +0.0
637,252 - -0.2
637,261 - -1.5
637,261 - +0.4
637,262 - +0.7
637,265 + -0.0
637,266 + +1.8
637,278 + +0.5
637,375 - +0.3
637,385 - +1.6
637,392 - +1.1
637,425 - -1.2
637,557 - +1.5
637,562 + -0.6
637,564 - +0.5
637,565 - -0.1
637,567 - -0.1
637,569 - -0.0
637,578 + +0.2
637,579 + +1.0
637,706 - -0.0
637,710 + -0.5
637,739 + -0.3
637,740 + +1.7
637,895 + +0.0
637,903 - -0.2
638,151 + -0.3
638,746 - 10700 mRNA_2332 0.18 -0.7
638,886 + 10700 mRNA_2332 0.21 +2.1
639,034 + 10700 mRNA_2332 0.25 -0.6
639,039 - 10700 mRNA_2332 0.25 -0.2
639,042 + 10700 mRNA_2332 0.25 +1.4
639,759 + 10700 mRNA_2332 0.43 +0.2
639,768 + 10700 mRNA_2332 0.44 +1.3
640,025 - 10700 mRNA_2332 0.50 +0.2
640,083 + 10700 mRNA_2332 0.52 -0.0
640,202 - 10700 mRNA_2332 0.55 +0.2
640,489 - 10700 mRNA_2332 0.62 -0.1
640,562 - 10700 mRNA_2332 0.64 -0.5
641,224 - 10700 mRNA_2332 0.80 +0.5
641,663 + -0.3
641,786 - +1.0
642,086 + +0.1
642,229 - +2.0
642,242 - -0.7
642,374 - -0.0
642,389 - -1.4
642,527 + -2.4
642,565 - +2.8

Or see this region's nucleotide sequence