Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2341

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10708 and 10709 are separated by 809 nucleotides10709 and 10710 are separated by 214 nucleotides mRNA_2340: 10708 - K06927 DPH6 diphthine-ammonia ligase, at 661,039 to 662,267 10708 mRNA_2341: 10709 - K03021 RPC2, POLR3B DNA-directed RNA polymerase III subunit RPC2, at 663,077 to 667,244 10709 mRNA_2342: 10710 - Hypothetical Protein, at 667,459 to 669,644 10710

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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662,445 - +1.5
662,590 - +0.6
662,595 - +0.2
667,532 - +0.2
667,551 - +0.7
667,673 + -0.1
667,692 - 10710 mRNA_2342 0.11 +0.8
667,712 - 10710 mRNA_2342 0.12 +0.1
667,715 + 10710 mRNA_2342 0.12 +0.3
667,721 + 10710 mRNA_2342 0.12 +0.1
667,729 - 10710 mRNA_2342 0.12 +1.0
667,799 - 10710 mRNA_2342 0.16 +0.7
667,846 - 10710 mRNA_2342 0.18 +0.0
667,965 - 10710 mRNA_2342 0.23 -1.1
667,976 + 10710 mRNA_2342 0.24 +0.6
667,994 - 10710 mRNA_2342 0.24 -0.5

Or see this region's nucleotide sequence