Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2379

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10746 and 10747 are separated by 138 nucleotides10747 and 10748 are separated by 364 nucleotides mRNA_2378: 10746 - Hypothetical Protein, at 753,983 to 754,459 10746 mRNA_2379: 10747 - HMMPfam-DASH complex subunit Duo1-PF08651, at 754,598 to 756,012 10747 mRNA_2380: 10748 - K07889 RAB5C Ras-related protein Rab-5C, at 756,377 to 757,308 10748

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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753,637 - +0.6
754,184 + 10746 mRNA_2378 0.42 +1.0
754,363 - 10746 mRNA_2378 0.80 -1.4
754,365 - 10746 mRNA_2378 0.80 +0.3
754,536 - -0.1
754,564 - -0.4
754,571 + +0.8
754,816 + 10747 mRNA_2379 0.15 -0.7
755,360 + 10747 mRNA_2379 0.54 +0.2
755,375 + 10747 mRNA_2379 0.55 +0.4
755,397 + 10747 mRNA_2379 0.56 -1.0
755,822 + 10747 mRNA_2379 0.87 -1.5
755,838 + 10747 mRNA_2379 0.88 +0.1
756,108 - +0.6
756,300 + +0.3
756,396 - -0.4
756,398 + -0.2
756,723 - 10748 mRNA_2380 0.37 -0.3

Or see this region's nucleotide sequence