Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2415

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10782 and 10783 are separated by 41 nucleotides10783 and 10784 are separated by 898 nucleotides mRNA_2414: 10782 - KOG1185 Thiamine pyrophosphate-requiring enzyme, at 67,466 to 70,057 10782 mRNA_2415: 10783 - Hypothetical Protein, at 70,099 to 71,162 10783 mRNA_2416: 10784 - SUPERFAMILY--SSF51445, at 72,061 to 74,634 10784

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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69,123 - 10782 mRNA_2414 0.64 +0.2
69,146 - 10782 mRNA_2414 0.65 +1.3
69,689 - 10782 mRNA_2414 0.86 -1.0
69,712 + 10782 mRNA_2414 0.87 +0.1
69,732 - 10782 mRNA_2414 0.87 +0.4
69,744 - 10782 mRNA_2414 0.88 +1.3
69,875 + -0.2
70,079 + -0.2
70,084 + -0.1
70,192 + +0.4
70,192 - +0.1
70,308 + 10783 mRNA_2415 0.20 +0.9
70,478 + 10783 mRNA_2415 0.36 +0.1
70,480 - 10783 mRNA_2415 0.36 +1.3
70,499 - 10783 mRNA_2415 0.38 +0.6
70,606 + 10783 mRNA_2415 0.48 -1.7
70,613 - 10783 mRNA_2415 0.48 -0.8
70,638 + 10783 mRNA_2415 0.51 -0.2
70,675 - 10783 mRNA_2415 0.54 +1.2
70,901 + 10783 mRNA_2415 0.75 +0.9
70,909 + 10783 mRNA_2415 0.76 -0.3
70,967 + 10783 mRNA_2415 0.82 -0.0
71,069 + -0.5
71,100 - +0.6
71,184 + +2.4
71,203 - +2.6
71,210 - -0.5
71,351 - -0.2
71,364 - +1.9
71,371 - +2.9
71,405 + +0.0
71,515 - -0.2
71,528 + +0.6
71,538 + +1.1
71,541 + +1.0
71,542 + +0.2
71,663 - +0.8
71,667 + +2.3
71,806 - +0.8
71,812 - -0.6
71,827 - -0.4
71,840 - +0.8
71,840 - +0.0
71,841 + -0.2
71,860 - +1.5
72,027 + -0.5
72,108 + +0.7
72,143 - +0.8
72,158 - +0.4

Or see this region's nucleotide sequence