Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2457

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt mRNA_2457: 10825 - K10589 UBE3C ubiquitin-protein ligase E3 C, at 177,733 to 180,454 10825

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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176,771 - -0.6
176,777 + -0.9
176,809 + +0.3
176,945 + +0.6
177,580 - +0.8
178,532 + 10825 mRNA_2457 0.29 -0.7
179,128 + 10825 mRNA_2457 0.51 +2.2
179,286 - 10825 mRNA_2457 0.57 +1.8
179,342 - 10825 mRNA_2457 0.59 +3.0
179,432 + 10825 mRNA_2457 0.62 -0.9
179,437 - 10825 mRNA_2457 0.63 -0.5
179,869 + 10825 mRNA_2457 0.78 +1.3
179,871 - 10825 mRNA_2457 0.79 +2.3
180,119 - 10825 mRNA_2457 0.88 +1.0
180,293 - +1.1
180,444 + -0.4
180,602 + +1.0
180,935 - +0.5
180,954 - -0.2
180,966 - +0.7
181,074 - -1.1
181,095 + +1.0
181,241 - +1.2
181,253 - -0.4
181,274 + -0.5

Or see this region's nucleotide sequence