Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2458

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10826 and 10827 are separated by 370 nucleotides mRNA_2458: 10826 - K04799 FEN1, RAD2 flap endonuclease-1, at 183,785 to 185,672 10826 mRNA_2459: 10827 - KOG2747 Histone acetyltransferase (MYST family), at 186,043 to 188,568 10827

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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182,882 - +0.7
183,034 + -1.3
183,206 + +0.5
183,333 - +1.6
183,355 - -1.0
183,630 + +0.6
183,773 + +1.6
185,978 - +0.7
186,290 + +2.6
186,579 - 10827 mRNA_2459 0.21 +2.0

Or see this region's nucleotide sequence