Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2466

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10833 and 10834 are separated by 450 nucleotides mRNA_2465: 10833 - K09291 TPR, MLP1, MLP2 nucleoprotein TPR, at 206,394 to 209,572 10833 mRNA_2466: 10834 - BLAST proteophosphoglycan ppg4 [Moniliophthora roreri M..., at 210,023 to 215,249 10834

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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209,625 + +2.6
209,626 - +0.9
209,634 - -1.0
209,646 - +0.3
209,654 + -0.4
209,655 - -0.3
209,696 - +0.4
209,697 + +0.2
209,734 + +0.3
210,049 + +0.8
210,106 - +1.7
210,146 + +0.8
210,257 - +1.4
210,373 - +1.8
210,407 + +1.7
210,417 + +1.1
210,554 - 10834 mRNA_2466 0.10 +0.5
210,578 + 10834 mRNA_2466 0.11 -0.5
210,670 + 10834 mRNA_2466 0.12 -0.9
211,024 - 10834 mRNA_2466 0.19 -0.8
211,168 - 10834 mRNA_2466 0.22 +1.5
211,252 + 10834 mRNA_2466 0.24 -0.0
211,425 + 10834 mRNA_2466 0.27 +1.9
211,478 - 10834 mRNA_2466 0.28 -0.2
211,696 + 10834 mRNA_2466 0.32 -0.6
212,009 + 10834 mRNA_2466 0.38 +2.3
212,146 - 10834 mRNA_2466 0.41 -0.0
212,195 + 10834 mRNA_2466 0.42 +0.7
212,229 - 10834 mRNA_2466 0.42 -0.6
212,539 - 10834 mRNA_2466 0.48 +0.7
212,620 + 10834 mRNA_2466 0.50 +0.0
212,843 - 10834 mRNA_2466 0.54 +2.0
212,857 + 10834 mRNA_2466 0.54 +0.6
212,910 - 10834 mRNA_2466 0.55 -1.3
212,911 + 10834 mRNA_2466 0.55 +0.4
212,912 - 10834 mRNA_2466 0.55 +0.4
212,913 - 10834 mRNA_2466 0.55 +0.4
213,019 + 10834 mRNA_2466 0.57 +0.7
213,074 + 10834 mRNA_2466 0.58 +0.5
213,482 + 10834 mRNA_2466 0.66 -2.6
213,484 + 10834 mRNA_2466 0.66 +0.1
213,648 + 10834 mRNA_2466 0.69 +2.2
213,899 + 10834 mRNA_2466 0.74 +0.9
214,195 + 10834 mRNA_2466 0.80 +1.9
214,334 + 10834 mRNA_2466 0.82 +1.5
214,479 + 10834 mRNA_2466 0.85 +0.3
214,496 - 10834 mRNA_2466 0.86 +0.2
214,896 + +0.8
214,913 + -0.4
215,195 - +1.0
215,204 - +1.1
215,220 + -0.3
215,223 + +0.1
215,245 - +1.2
215,260 + +1.8
215,348 - +0.5
215,375 + +1.3
215,507 - +1.8
215,511 - +0.1
215,542 - +0.5
215,638 - -0.1
215,662 + +0.9
215,668 - +0.4
216,081 + +0.6
216,117 - +0.3
216,141 - +0.2
216,168 + +0.4

Or see this region's nucleotide sequence