Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2477

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10844 and 10845 are separated by 417 nucleotides10845 and 10846 are separated by 380 nucleotides mRNA_2476: 10844 - KOG0673 Thymidylate synthase, at 240,298 to 241,620 10844 mRNA_2477: 10845 - K00560 thyA, TYMS thymidylate synthase, at 242,038 to 243,139 10845 mRNA_2478: 10846 - K20293 COG6, COD2 conserved oligomeric Golgi complex subunit 6, at 243,520 to 246,165 10846

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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241,256 - 10844 mRNA_2476 0.72 +2.7
241,368 + 10844 mRNA_2476 0.81 +2.5
241,518 + +0.1
241,540 - +0.7
241,584 - +1.1
241,659 - +0.3
243,285 + -0.4
243,304 - +0.1
243,308 + -0.5
243,398 - -0.1
243,434 - -0.1
243,438 + +1.6
243,458 + -0.3
243,458 + +0.8
243,466 + -0.9
243,600 - +0.4
243,746 + +0.5

Or see this region's nucleotide sequence