Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2515

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10882 and 10883 are separated by 296 nucleotides10883 and 10884 are separated by 254 nucleotides mRNA_2514: 10882 - Hypothetical Protein, at 330,199 to 330,672 10882 mRNA_2515: 10883 - KOG0035 Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily), at 330,969 to 334,313 10883 mRNA_2516: 10884 - KOG0627 Heat shock transcription factor, at 334,568 to 336,151 10884

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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329,983 - +0.6
330,024 + +0.8
330,026 + +0.8
330,238 + -0.5
330,404 + 10882 mRNA_2514 0.43 +0.3
330,459 - 10882 mRNA_2514 0.55 +1.0
330,591 - 10882 mRNA_2514 0.83 +1.3
330,605 + 10882 mRNA_2514 0.86 +1.4
330,608 + 10882 mRNA_2514 0.86 +0.1
330,647 - -0.3
330,647 - +0.6
330,741 - +2.1
330,751 - +1.7
330,764 + -0.4
330,787 - +1.4
330,793 - -0.4
330,794 + +0.1
330,794 + +0.1
330,797 - +0.9
330,920 + +1.7
330,924 + +0.7
330,925 + -2.9
332,388 + 10883 mRNA_2515 0.42 +0.1
332,598 + 10883 mRNA_2515 0.49 +0.3
332,781 - 10883 mRNA_2515 0.54 +0.4
334,252 + +3.3
334,321 + +0.6
335,112 - 10884 mRNA_2516 0.34 +1.1

Or see this region's nucleotide sequence