Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2520

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10887 and 10888 are separated by 523 nucleotides10888 and 10889 are separated by 346 nucleotides mRNA_2519: 10887 - SMART-Parallel beta-helix repeats-SM00710,SUPERFAMILY--SSF51126, at 342,708 to 344,522 10887 mRNA_2520: 10888 - KOG1441 Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter, at 345,046 to 346,549 10888 mRNA_2521: 10889 - BLAST beta-glucosidase 1 precursor [Aspergillus rambellii], at 346,896 to 348,680 10889

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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344,049 - 10887 mRNA_2519 0.74 +0.7
344,212 + 10887 mRNA_2519 0.83 +0.8
344,385 + -1.0
344,387 - -0.3
344,664 - -1.0
344,680 - +0.4
344,688 + -0.0
344,774 - -2.2
344,814 + -1.1
344,831 - -1.4
344,968 + -0.1
345,099 - -0.2
345,142 - -0.9
345,355 - 10888 mRNA_2520 0.21 +0.1
345,406 - 10888 mRNA_2520 0.24 -1.3
345,420 + 10888 mRNA_2520 0.25 -0.5
345,546 - 10888 mRNA_2520 0.33 -1.4
345,567 + 10888 mRNA_2520 0.35 -0.1
345,667 - 10888 mRNA_2520 0.41 -0.5
345,703 + 10888 mRNA_2520 0.44 +0.9
346,236 + 10888 mRNA_2520 0.79 +2.4
346,239 - 10888 mRNA_2520 0.79 -1.8
346,712 + +1.1

Or see this region's nucleotide sequence