Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2551

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10918 and 10919 are separated by 52 nucleotides10919 and 10920 are separated by 959 nucleotides mRNA_2550: 10918 - KOG3116 Predicted C3H1-type Zn-finger protein, at 425,175 to 426,192 10918 mRNA_2551: 10919 - K00799 GST, gst glutathione S-transferase, at 426,245 to 427,122 10919 mRNA_2552: 10920 - Hypothetical Protein, at 428,082 to 428,710 10920

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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425,284 - 10918 mRNA_2550 0.11 -0.2
425,287 - 10918 mRNA_2550 0.11 -0.4
425,296 + 10918 mRNA_2550 0.12 -1.3
425,438 - 10918 mRNA_2550 0.26 +0.9
425,440 - 10918 mRNA_2550 0.26 +0.2
425,720 - 10918 mRNA_2550 0.54 +0.2
425,726 + 10918 mRNA_2550 0.54 +1.3
425,981 - 10918 mRNA_2550 0.79 +0.8
426,130 - +1.4
426,161 + -0.9
426,599 - 10919 mRNA_2551 0.40 +0.9
426,608 + 10919 mRNA_2551 0.41 +2.2
426,891 + 10919 mRNA_2551 0.74 -0.8
427,455 + +0.9
427,482 - -1.1
427,493 - +2.5
427,494 - -0.2
427,507 + +0.8
427,516 - +1.0
427,625 - +0.6
427,744 - -0.2
427,756 - +0.2
427,756 - +1.2
427,761 + -0.3
427,779 - +0.0
427,783 - +2.4
427,795 + +0.2
428,026 + -1.1
428,040 + +0.7
428,086 + +1.4
428,105 - +1.3
428,121 - +0.4

Or see this region's nucleotide sequence