Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2595

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10962 and 10963 are separated by 92 nucleotides10963 and 10964 are separated by 149 nucleotides mRNA_2594: 10962 - K12200 PDCD6IP, ALIX, RIM20 programmed cell death 6-interacting protein, at 556,139 to 559,559 10962 mRNA_2595: 10963 - K14012 SHP1, UBX1, NSFL1C UBX domain-containing protein 1, at 559,652 to 561,565 10963 mRNA_2596: 10964 - K00966 GMPP mannose-1-phosphate guanylyltransferase, at 561,715 to 563,654 10964

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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558,709 + 10962 mRNA_2594 0.75 +0.1
559,284 + -0.8
559,287 - +0.1
559,588 - -0.4
559,589 - -0.9
559,590 - +0.0
560,057 - 10963 mRNA_2595 0.21 -0.1
560,065 - 10963 mRNA_2595 0.22 +0.0
561,679 + -1.4
561,681 + -0.5
561,688 + +0.1
561,689 + -0.1
561,819 + -2.1
561,839 + +0.1
561,847 - -1.5
562,000 - 10964 mRNA_2596 0.15 +1.0
562,036 + 10964 mRNA_2596 0.17 -0.1
562,117 - 10964 mRNA_2596 0.21 +0.4
562,125 + 10964 mRNA_2596 0.21 +0.2
562,137 - 10964 mRNA_2596 0.22 +0.5
562,140 + 10964 mRNA_2596 0.22 -0.9
562,287 - 10964 mRNA_2596 0.29 +1.2

Or see this region's nucleotide sequence