Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2649

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt mRNA_2649: 11017 - K08157 TPO1 MFS transporter, DHA1 family, multidrug resistance protein, at 672,957 to 675,080 11017

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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672,228 - +0.7
672,230 + +1.0
672,232 - +0.0
672,233 - -0.5
672,235 - +2.4
672,245 + -0.1
672,246 + -1.1
672,364 - +2.0
672,706 - +1.1
672,787 + +0.0
673,263 + 11017 mRNA_2649 0.14 +0.2
673,379 + 11017 mRNA_2649 0.20 -0.5
673,402 - 11017 mRNA_2649 0.21 +1.9
673,685 + 11017 mRNA_2649 0.34 -1.7
673,698 + 11017 mRNA_2649 0.35 +0.7
673,744 + 11017 mRNA_2649 0.37 +0.6
673,840 - 11017 mRNA_2649 0.42 -0.2
673,898 + 11017 mRNA_2649 0.44 -0.6
673,952 - 11017 mRNA_2649 0.47 -1.5
674,144 - 11017 mRNA_2649 0.56 -0.4
674,173 + 11017 mRNA_2649 0.57 +0.9
674,210 - 11017 mRNA_2649 0.59 +1.7
674,315 - 11017 mRNA_2649 0.64 +0.6
674,438 - 11017 mRNA_2649 0.70 +0.8
674,462 + 11017 mRNA_2649 0.71 +0.4
674,582 + 11017 mRNA_2649 0.77 +0.5
674,593 - 11017 mRNA_2649 0.77 -0.8
675,011 - -0.2
675,020 - +0.9
675,145 - +0.3
675,445 - -0.3
675,479 - +0.6
675,483 + +0.1
675,487 + +0.1
675,511 - -1.2
675,596 - +0.5
675,605 + +0.4
675,608 + +0.3
675,615 - +1.3
675,618 - +0.5
675,629 - +1.6
675,630 - -0.6
675,630 + +0.6
675,640 + -0.7
675,642 - +0.4
675,649 - +1.3
675,652 - -0.2
675,652 - +0.3
675,654 + +0.1
675,654 + +0.9
675,655 - +1.1
675,659 + +1.8
675,659 + -0.0
675,659 + +0.1
675,659 + -0.1
675,695 - +0.5
675,695 - -0.3
675,709 + +0.1
675,744 - +0.4
675,967 + -0.2
675,970 + +0.2
675,987 + -0.2
675,990 - -1.9

Or see this region's nucleotide sequence