Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2718

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11085 and 11086 are separated by 51 nucleotides11086 and 11087 are separated by 228 nucleotides mRNA_2717: 11085 - HMMPfam-Nitronate monooxygenase-PF03060,SUPERFAMILY--SSF51412, at 71,439 to 72,597 11085 mRNA_2718: 11086 - SUPERFAMILY--SSF50475, at 72,649 to 73,814 11086 mRNA_2719: 11087 - Hypothetical Protein, at 74,043 to 75,833 11087

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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71,843 - 11085 mRNA_2717 0.35 -0.2
71,952 + 11085 mRNA_2717 0.44 -1.9
72,350 + 11085 mRNA_2717 0.79 -0.0
72,407 - 11085 mRNA_2717 0.84 +0.4
72,468 - 11085 mRNA_2717 0.89 -0.1
72,536 + -0.1
72,536 + +0.7
72,547 - +0.1
72,556 + -0.4
72,563 + +2.0
72,669 + +0.1
72,837 - 11086 mRNA_2718 0.16 +0.1
72,882 + 11086 mRNA_2718 0.20 +0.1
72,887 + 11086 mRNA_2718 0.20 -0.2
72,887 + 11086 mRNA_2718 0.20 +0.7
73,025 + 11086 mRNA_2718 0.32 -2.0
73,147 + 11086 mRNA_2718 0.43 +1.9
73,399 + 11086 mRNA_2718 0.64 +0.4
73,415 + 11086 mRNA_2718 0.66 +0.9
73,445 - 11086 mRNA_2718 0.68 -0.3
73,452 - 11086 mRNA_2718 0.69 +2.7
73,538 + 11086 mRNA_2718 0.76 -0.3
73,553 - 11086 mRNA_2718 0.78 -0.2
73,583 + 11086 mRNA_2718 0.80 -0.9
73,697 - 11086 mRNA_2718 0.90 +0.2
73,700 - +0.2
73,718 - -0.1
73,756 + +2.0
73,827 - +1.4
73,844 + +0.9
73,989 - +1.0
73,992 + -1.3
73,996 + +0.1
73,997 + +0.5
74,005 + +0.4
74,008 - +0.2
74,011 - -0.4
74,015 - +0.8
74,023 - +1.4
74,051 - +0.1
74,074 - +0.3
74,075 + -0.1
74,079 + +1.5
74,092 + +0.3
74,094 + +0.0
74,126 + -0.6
74,184 + -0.0
74,188 + +0.4
74,236 - 11087 mRNA_2719 0.11 -0.4
74,242 - 11087 mRNA_2719 0.11 -1.1
74,246 + 11087 mRNA_2719 0.11 +1.2
74,250 + 11087 mRNA_2719 0.12 +1.4
74,252 + 11087 mRNA_2719 0.12 +0.1
74,258 + 11087 mRNA_2719 0.12 -3.6
74,265 + 11087 mRNA_2719 0.12 -0.1
74,267 + 11087 mRNA_2719 0.13 -0.2
74,269 + 11087 mRNA_2719 0.13 +1.1
74,390 - 11087 mRNA_2719 0.19 -0.9
74,398 + 11087 mRNA_2719 0.20 +0.8
74,536 - 11087 mRNA_2719 0.28 +0.5
74,538 + 11087 mRNA_2719 0.28 +0.9
74,562 + 11087 mRNA_2719 0.29 +1.5
74,643 + 11087 mRNA_2719 0.34 +0.8

Or see this region's nucleotide sequence