Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2748

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11116 and 11117 are separated by 632 nucleotides mRNA_2748: 11116 - KOG3772 M-phase inducer phosphatase, at 131,237 to 131,877 11116 mRNA_2749: 11117 - K02146 ATPeV0D, ATP6D V-type H+-transporting ATPase subunit d, at 132,510 to 133,901 11117

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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130,247 - +2.0
130,392 + -0.5
130,540 + +0.1
130,549 + +0.5
130,555 + +0.3
130,688 + -1.7
130,701 + -1.5
130,706 - -1.9
130,712 + +2.7
130,719 + +1.3
130,825 - +1.0
130,843 - +2.0
130,861 - +0.1
130,865 + -1.2
130,870 + -1.9
130,870 + +2.1
130,874 - +0.3
130,874 + -0.2
130,899 - +0.9
130,900 + +0.1
130,908 + +0.0
130,916 - -0.2
130,923 + -0.1
130,924 + +0.4
130,927 + +2.2
130,994 - +1.0
131,011 - -0.1
131,019 + +0.2
131,020 + +1.8
131,025 - -0.4
131,029 + -0.1
131,033 + -0.2
131,049 + -0.6
131,051 + +1.6
131,056 + -0.1
131,061 + +0.2
131,104 + +0.8
131,117 + -0.8
131,153 + +0.2
131,207 + +1.4
131,208 + -0.2
131,300 - -0.1
131,437 - 11116 mRNA_2748 0.31 +1.0
131,467 + 11116 mRNA_2748 0.36 +4.1
131,846 + -1.0
131,870 - +1.0
132,017 - +0.3
132,020 + -0.3
132,023 - -0.2
132,041 + +1.3
132,181 + -0.2

Or see this region's nucleotide sequence