Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2761

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11128 and 11129 are separated by 665 nucleotides11129 and 11130 are separated by 231 nucleotides mRNA_2760: 11128 - HMMPfam-Acyltransferase-PF01553,SMART-Phosphate acyltransferases-SM00563,SUPERFAMILY--SSF69593, at 153,952 to 156,416 11128 mRNA_2761: 11129 - K00031 IDH1, IDH2, icd isocitrate dehydrogenase, at 157,082 to 158,929 11129 mRNA_2762: 11130 - BLAST Protein pof8 [Termitomyces sp. J132], at 159,161 to 161,620 11130

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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156,107 + 11128 mRNA_2760 0.87 -0.2
156,297 + -1.6
156,368 - +0.4
156,438 - -0.0
156,442 + -0.1
156,473 - +0.2
156,493 - -0.1
156,521 + +1.2
156,535 - +0.4
156,535 + -0.6
156,544 + +1.7
156,555 - +0.4
156,558 - +0.8
156,561 + +0.4
156,561 - +0.5
156,567 - +0.4
156,691 + +1.7
156,838 + -0.1
156,938 - -0.8
156,956 + +0.7
156,976 - +1.6
156,977 + +1.2
156,978 - +1.2
156,984 - -0.5
156,992 + +0.4
156,997 + -0.8
156,999 + -0.5
157,002 - -0.4
157,002 - +0.7
157,007 - +0.4
157,009 + -0.3
157,012 + +0.3
157,029 - +2.1
157,030 + +0.3
157,051 - +0.7
157,173 + -1.2
157,192 + -1.2
157,195 + +2.0
157,203 - +0.7
157,207 + -1.1
157,222 + -1.3
157,308 + 11129 mRNA_2761 0.12 +1.1
157,353 - 11129 mRNA_2761 0.15 +0.4
157,353 - 11129 mRNA_2761 0.15 -1.2
157,379 + 11129 mRNA_2761 0.16 +0.8
157,382 + 11129 mRNA_2761 0.16 -0.5
157,385 + 11129 mRNA_2761 0.16 -0.7
157,399 + 11129 mRNA_2761 0.17 -0.2
157,459 - 11129 mRNA_2761 0.20 +1.0
157,520 + 11129 mRNA_2761 0.24 +0.0
157,520 + 11129 mRNA_2761 0.24 +0.2
157,520 + 11129 mRNA_2761 0.24 +2.0
157,666 + 11129 mRNA_2761 0.32 +0.1
158,342 - 11129 mRNA_2761 0.68 -0.3
158,404 + 11129 mRNA_2761 0.72 -1.3
158,418 + 11129 mRNA_2761 0.72 +1.8
158,418 + 11129 mRNA_2761 0.72 -0.9
158,473 - 11129 mRNA_2761 0.75 +0.9
158,800 - -1.9
158,978 + -1.9
159,108 - +1.5
159,110 - +0.0
159,546 + 11130 mRNA_2762 0.16 -0.0
159,692 - 11130 mRNA_2762 0.22 +1.2
159,823 + 11130 mRNA_2762 0.27 +0.2

Or see this region's nucleotide sequence