Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2787

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11154 and 11155 are separated by 138 nucleotides mRNA_2786: 11154 - Hypothetical Protein, at 209,744 to 210,942 11154 mRNA_2787: 11155 - KOG1848 Uncharacterized conserved protein, at 211,081 to 216,177 11155

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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210,107 + 11154 mRNA_2786 0.30 +1.7
210,397 - 11154 mRNA_2786 0.54 -0.1
210,407 + 11154 mRNA_2786 0.55 +0.1
210,431 + 11154 mRNA_2786 0.57 +2.6
210,567 - 11154 mRNA_2786 0.69 +2.1
210,637 - 11154 mRNA_2786 0.74 +1.2
210,675 - 11154 mRNA_2786 0.78 +0.6
210,683 + 11154 mRNA_2786 0.78 +0.3
210,697 + 11154 mRNA_2786 0.79 +1.4
210,827 + +0.9
210,830 - -0.0
210,844 + +0.5
210,948 - +2.0
210,991 + +2.5
211,000 + +1.2
211,119 + +1.7
211,251 + +0.7
211,275 + +0.9
211,376 - +0.4
211,584 + -0.4
211,728 + 11155 mRNA_2787 0.13 +0.2
211,730 - 11155 mRNA_2787 0.13 +0.9
211,766 + 11155 mRNA_2787 0.13 +1.0
211,876 + 11155 mRNA_2787 0.16 +0.3
211,886 - 11155 mRNA_2787 0.16 +0.1
212,095 + 11155 mRNA_2787 0.20 -0.3
212,099 - 11155 mRNA_2787 0.20 -0.1
212,101 + 11155 mRNA_2787 0.20 +1.5
212,136 + 11155 mRNA_2787 0.21 +0.7
212,165 + 11155 mRNA_2787 0.21 +0.4
212,243 + 11155 mRNA_2787 0.23 +1.3
212,576 - 11155 mRNA_2787 0.29 +0.7
212,593 - 11155 mRNA_2787 0.30 +1.4
212,599 + 11155 mRNA_2787 0.30 +0.7
212,950 - 11155 mRNA_2787 0.37 +0.6
213,175 - 11155 mRNA_2787 0.41 +0.4
213,204 + 11155 mRNA_2787 0.42 -1.8
213,351 - 11155 mRNA_2787 0.45 +1.3
213,372 + 11155 mRNA_2787 0.45 +2.0
213,448 - 11155 mRNA_2787 0.46 +1.5
213,510 - 11155 mRNA_2787 0.48 +0.7
213,593 - 11155 mRNA_2787 0.49 +1.9
213,635 + 11155 mRNA_2787 0.50 +1.0
213,823 + 11155 mRNA_2787 0.54 +1.1
214,081 - 11155 mRNA_2787 0.59 +0.7
214,184 - 11155 mRNA_2787 0.61 +1.3
214,248 - 11155 mRNA_2787 0.62 +1.5
214,286 + 11155 mRNA_2787 0.63 -1.2
214,505 - 11155 mRNA_2787 0.67 +0.6
214,511 + 11155 mRNA_2787 0.67 +1.0
214,523 - 11155 mRNA_2787 0.68 +0.4
214,543 + 11155 mRNA_2787 0.68 +0.5
214,891 + 11155 mRNA_2787 0.75 +0.2
215,414 - 11155 mRNA_2787 0.85 -0.0
215,440 + 11155 mRNA_2787 0.86 +0.5
215,444 - 11155 mRNA_2787 0.86 +0.3
215,473 - 11155 mRNA_2787 0.86 +1.7
215,584 + 11155 mRNA_2787 0.88 +3.3
215,594 - 11155 mRNA_2787 0.89 +1.5
215,606 + 11155 mRNA_2787 0.89 +0.5
215,658 + 11155 mRNA_2787 0.90 +0.1
215,721 - +2.5
215,738 - +0.6
215,799 + +0.7
215,868 + -0.6
215,896 - -1.8
215,913 + +0.4
215,928 + +0.2
216,181 + +0.4
216,889 - +2.0
216,900 + +0.6
216,911 - +0.2
216,933 - +0.9
216,949 + -0.3

Or see this region's nucleotide sequence