Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2807

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11175 and 11176 are separated by 334 nucleotides mRNA_2807: 11175 - K11485 MTF2, PCL2 polycomb-like protein 2, at 267,312 to 269,571 11175 mRNA_2808: 11176 - KOG4539 Uncharacterized conserved protein, at 269,906 to 271,117 11176

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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266,432 - -0.5
266,704 - +1.1
266,999 + -0.1
267,533 + +0.4
267,559 - 11175 mRNA_2807 0.11 -0.5
267,573 - 11175 mRNA_2807 0.12 +0.5
268,025 - 11175 mRNA_2807 0.32 -1.0
268,142 - 11175 mRNA_2807 0.37 +0.2
268,322 + 11175 mRNA_2807 0.45 -1.4
268,576 + 11175 mRNA_2807 0.56 -1.6
268,580 + 11175 mRNA_2807 0.56 -2.4
268,592 + 11175 mRNA_2807 0.57 -1.6
268,693 - 11175 mRNA_2807 0.61 -0.7
268,744 - 11175 mRNA_2807 0.63 -1.5
268,890 - 11175 mRNA_2807 0.70 +0.0
269,167 + 11175 mRNA_2807 0.82 -3.1
269,190 + 11175 mRNA_2807 0.83 -2.0
269,315 + 11175 mRNA_2807 0.89 -0.1
269,330 + 11175 mRNA_2807 0.89 +0.3
269,456 + -2.6
269,480 - -1.0
269,489 - -2.6
269,603 - +0.0
269,734 + -0.4
269,759 + -0.2
269,822 + -0.9
269,876 - +0.1
269,879 - +0.0
269,910 + -0.3
269,913 - -0.1
270,045 - 11176 mRNA_2808 0.11 +1.9
270,182 + 11176 mRNA_2808 0.23 +1.0
270,184 - 11176 mRNA_2808 0.23 -0.3
270,206 - 11176 mRNA_2808 0.25 +1.3
270,469 + 11176 mRNA_2808 0.46 +0.4

Or see this region's nucleotide sequence