Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2827

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11194 and 11195 are separated by 65 nucleotides11195 and 11196 are separated by 463 nucleotides mRNA_2826: 11194 - HMMPfam-Methyltransferase domain-PF13489,SUPERFAMILY--SSF53335, at 308,472 to 309,591 11194 mRNA_2827: 11195 - Hypothetical Protein, at 309,657 to 312,569 11195 mRNA_2828: 11196 - Hypothetical Protein, at 313,033 to 313,687 11196

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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308,708 + 11194 mRNA_2826 0.21 +0.8
308,725 - 11194 mRNA_2826 0.23 -0.1
308,870 + 11194 mRNA_2826 0.36 -0.2
308,997 + 11194 mRNA_2826 0.47 +0.5
309,058 + 11194 mRNA_2826 0.52 -1.1
309,177 - 11194 mRNA_2826 0.63 +1.4
309,632 + +0.4
309,714 + -0.4
312,980 + +0.3
312,981 + +1.4
312,983 - -0.6
312,987 - -0.2
313,033 - +0.9
313,141 + 11196 mRNA_2828 0.16 +2.5
313,156 + 11196 mRNA_2828 0.19 -0.2
313,449 + 11196 mRNA_2828 0.64 +3.8

Or see this region's nucleotide sequence