Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2881

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11248 and 11249 are separated by 947 nucleotides11249 and 11250 are separated by 736 nucleotides mRNA_2880: 11248 - K10531 pvdA L-ornithine N5-oxygenase, at 436,140 to 438,445 11248 mRNA_2881: 11249 - KOG0254 Predicted transporter (major facilitator superfamily), at 439,393 to 442,330 11249 mRNA_2882: 11250 - Hypothetical Protein, at 443,067 to 444,033 11250

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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438,405 + +1.0
438,415 + +0.6
438,514 + -1.7
438,519 - +2.0
438,667 - -0.4
438,669 + -1.7
438,702 - +0.0
438,785 - -0.6
438,790 + -0.4
438,816 + +0.6
438,932 - -0.4
438,940 - +1.7
438,954 + +1.5
438,966 - -0.4
438,970 + +0.2
438,972 + +0.8
438,972 + -0.1
438,973 - +0.1
438,976 - -0.7
438,977 - +0.0
438,979 - +1.3
439,006 - -1.6
439,006 - +1.6
439,006 - +0.6
439,020 + +1.4
439,020 - +1.3
439,023 + -1.4
439,031 - +0.5
439,038 - +0.5
439,038 - +0.5
439,039 - -1.4
439,039 - -0.3
439,054 + -0.2
439,111 + -0.2
439,121 - -0.3
439,138 - +1.1
439,231 - -2.1
439,233 - +0.3
439,237 + -0.8
439,242 + +0.1
439,243 - +0.1
439,246 - +0.4
439,257 + +0.9
439,275 + -0.9
439,275 - +1.7
439,284 + +2.6
439,296 + +1.4
439,322 - +0.3
439,326 - +0.5
439,330 + -1.2
439,336 + -0.6
439,337 - +1.4
439,353 + -0.2
439,375 - +1.5
439,475 + +2.1
439,479 + -2.5
439,486 - -0.3
439,493 - +0.7
439,498 - +0.9
439,500 - +0.3
439,504 + +1.1
439,510 + +0.5
439,511 + +0.3
439,514 + -1.1
439,517 + -1.1
439,576 - +0.7
439,579 - -0.3
439,600 - -0.5
439,607 - -0.3
439,613 - +0.7
439,621 + +2.2
439,630 - +1.2
439,639 - +0.9
439,645 - +1.2
439,651 - +0.3
439,667 - -0.5
439,679 - +1.4
439,814 - 11249 mRNA_2881 0.14 -0.3
439,846 - 11249 mRNA_2881 0.15 -0.6
440,057 - 11249 mRNA_2881 0.23 +1.4
440,136 + 11249 mRNA_2881 0.25 -0.5
440,336 + 11249 mRNA_2881 0.32 -1.5
440,519 + 11249 mRNA_2881 0.38 -1.9
440,529 - 11249 mRNA_2881 0.39 -0.8
440,674 - 11249 mRNA_2881 0.44 -0.1
440,677 + 11249 mRNA_2881 0.44 -0.5
440,729 + 11249 mRNA_2881 0.45 +0.1
440,812 - 11249 mRNA_2881 0.48 -0.2
440,979 - 11249 mRNA_2881 0.54 -1.2
441,099 + 11249 mRNA_2881 0.58 +3.1
441,680 - 11249 mRNA_2881 0.78 +0.2
441,834 - 11249 mRNA_2881 0.83 +1.4
442,014 - 11249 mRNA_2881 0.89 +0.8
442,149 - -0.6
442,273 - +0.4
442,279 + -0.3
442,286 - -0.2
442,292 - -0.8
442,375 + -0.5
442,388 - +0.5
442,414 - +0.5
442,434 - +0.3
442,566 - -0.2
442,737 - +0.4
443,016 - +0.9
443,168 + 11250 mRNA_2882 0.10 -0.6
443,325 - 11250 mRNA_2882 0.27 -0.2
443,330 - 11250 mRNA_2882 0.27 -0.7

Or see this region's nucleotide sequence