Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2894

Experiment: 40 hrs Low Buoyancy

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11261 and 11262 are separated by 715 nucleotides11262 and 11263 are separated by 215 nucleotides mRNA_2893: 11261 - HMMPfam-Protein of unknown function (DUF2823)-PF11034, at 473,665 to 474,267 11261 mRNA_2894: 11262 - SUPERFAMILY--SSF52047, at 474,983 to 476,277 11262 mRNA_2895: 11263 - KOG3043 Predicted hydrolase related to dienelactone hydrolase, at 476,493 to 477,623 11263

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
remove
475,240 + 11262 mRNA_2894 0.20 +0.5
475,363 - 11262 mRNA_2894 0.29 -0.4
475,645 - 11262 mRNA_2894 0.51 +0.1
475,847 - 11262 mRNA_2894 0.67 +1.5
475,972 + 11262 mRNA_2894 0.76 +0.9
476,247 + +0.0
476,277 + -2.4
476,348 + +0.9
476,381 - +0.4
476,393 + -0.1
476,591 + +0.5
476,606 + 11263 mRNA_2895 0.10 +1.3
476,717 + 11263 mRNA_2895 0.20 +0.1
476,733 + 11263 mRNA_2895 0.21 +2.6
476,739 - 11263 mRNA_2895 0.22 +1.0
476,742 - 11263 mRNA_2895 0.22 -0.2
476,876 - 11263 mRNA_2895 0.34 +0.7
476,890 + 11263 mRNA_2895 0.35 +0.4
476,991 + 11263 mRNA_2895 0.44 -0.4
477,035 - 11263 mRNA_2895 0.48 -0.1
477,269 + 11263 mRNA_2895 0.69 +0.9

Or see this region's nucleotide sequence