Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2903

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11270 and 11271 are separated by 149 nucleotides11271 and 11272 are separated by 166 nucleotides mRNA_2902: 11270 - K20367 ERGIC3, ERV46 endoplasmic reticulum-Golgi intermediate compartment protein 3, at 498,164 to 500,409 11270 mRNA_2903: 11271 - K06662 HRAD17, RAD24 cell cycle checkpoint protein, at 500,559 to 503,580 11271 mRNA_2904: 11272 - K03847 ALG12 alpha-1,6-mannosyltransferase, at 503,747 to 505,698 11272

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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499,634 - 11270 mRNA_2902 0.65 +0.8
499,639 - 11270 mRNA_2902 0.66 +0.3
499,926 + 11270 mRNA_2902 0.78 +1.5
500,182 + 11270 mRNA_2902 0.90 -0.2
500,489 + +0.7
500,671 - +2.4
500,800 - +0.2
500,800 - +2.2
500,972 - 11271 mRNA_2903 0.14 -0.6
501,261 - 11271 mRNA_2903 0.23 +0.6
502,321 + 11271 mRNA_2903 0.58 +2.0
502,933 + 11271 mRNA_2903 0.79 -0.0
503,382 - +0.6
503,444 + -2.6
503,702 - -0.5
503,702 + -0.6
504,007 - 11272 mRNA_2904 0.13 -1.5
504,046 + 11272 mRNA_2904 0.15 -2.5
504,147 - 11272 mRNA_2904 0.20 -2.8
504,303 + 11272 mRNA_2904 0.28 -1.1
504,310 + 11272 mRNA_2904 0.29 -2.6

Or see this region's nucleotide sequence