Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2936

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11304 and 11305 are separated by 985 nucleotides mRNA_2936: 11304 - Hypothetical Protein, at 589,318 to 590,178 11304 mRNA_2937: 11305 - K14521 NAT10, KRE33 N-acetyltransferase 10, at 591,164 to 595,198 11305

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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588,572 - +0.5
588,689 + -0.5
588,849 - +1.6
588,858 - +0.4
588,903 + -0.2
588,990 - +0.2
588,999 - +0.7
589,007 + -2.1
589,035 + -0.7
589,048 - +1.2
589,051 + +0.2
589,054 + +1.5
589,057 - -0.1
589,058 - +2.2
589,060 - +0.6
589,067 - +0.2
589,071 + -0.0
589,071 + -0.2
589,072 + -0.5
589,076 + -0.2
589,077 + -1.2
589,078 - +1.6
589,079 + -0.9
589,079 - +0.5
589,080 + -1.6
589,081 - +0.3
589,089 + +0.1
589,096 + +1.0
589,098 - +1.7
589,103 - +0.7
589,167 + +0.6
589,191 - +1.1
589,220 + +0.4
589,232 - +0.4
589,248 + +0.6
589,714 + 11304 mRNA_2936 0.46 +0.4
589,728 - 11304 mRNA_2936 0.48 +0.9
589,813 + 11304 mRNA_2936 0.57 +0.0
589,912 + 11304 mRNA_2936 0.69 -0.3
589,952 + 11304 mRNA_2936 0.74 +0.6
590,104 + -2.1
590,114 - -0.4
590,568 + -0.6
590,684 + -0.3
590,695 + +2.7
590,802 + +0.9
590,821 + +1.1
590,823 + +0.9
590,857 + -0.3
590,859 + +1.1
590,878 + -0.7
591,003 - -1.9
591,023 - +0.9
591,025 - +2.0
591,031 - -1.8

Or see this region's nucleotide sequence