Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2949

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11316 and 11317 are separated by 617 nucleotides mRNA_2948: 11316 - K12817 PRPF18, PRP18 pre-mRNA-splicing factor 18, at 625,370 to 627,125 11316 mRNA_2949: 11317 - K02267 COX6B cytochrome c oxidase subunit 6b, at 627,743 to 628,552 11317

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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627,196 - +1.2
627,208 - +0.2
627,213 - -0.8
627,215 + -1.9
627,217 + +0.5
627,218 + -0.8
627,224 + +0.9
627,341 - -0.5
627,347 - +1.3
627,353 - -1.7
627,354 + -0.7
627,361 + -1.2
627,374 + -0.1
627,379 + -0.2
627,517 + +0.8
627,533 + -0.3
627,643 - +1.0
627,644 - -0.1
627,670 + +1.8
627,949 + 11317 mRNA_2949 0.25 -0.6
627,949 - 11317 mRNA_2949 0.25 +0.7
627,953 - 11317 mRNA_2949 0.26 -0.3
628,022 + 11317 mRNA_2949 0.34 -0.9
628,379 - 11317 mRNA_2949 0.79 -0.4
628,381 + 11317 mRNA_2949 0.79 -0.2
628,562 - +2.8
628,662 + +0.1
628,696 - +2.4
628,834 - +0.3
628,842 + -0.0

Or see this region's nucleotide sequence