Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2970

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11336 and 11337 are separated by 273 nucleotides11337 and 11338 are separated by 305 nucleotides11338 and 11339 are separated by 80 nucleotides mRNA_2968: 11336 - Hypothetical Protein, at 673,383 to 681,780 11336 mRNA_2969: 11337 - Hypothetical Protein, at 682,054 to 682,344 11337 mRNA_2970: 11338 - K00219 fadH 2,4-dienoyl-CoA reductase (NADPH2), at 682,650 to 684,031 11338 mRNA_2971: 11339 - HMMPfam-Anp1-PF03452,SUPERFAMILY--SSF53448, at 684,112 to 685,866 11339

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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681,662 + -0.2
681,675 + +1.4
681,762 - -0.2
681,762 - +0.1
681,765 + -0.2
681,824 - -0.3
681,951 + +0.1
681,961 - +0.5
681,962 + +0.1
682,008 - +0.7
682,253 - 11337 mRNA_2969 0.68 +0.0
682,265 - 11337 mRNA_2969 0.73 +0.5
682,282 + 11337 mRNA_2969 0.78 +0.4
682,397 - +0.8
682,527 - -0.0
682,542 - -0.8
682,549 + +0.3
682,585 - +0.7
682,587 - +0.0
682,588 + +0.3
682,779 - +0.3
682,853 + 11338 mRNA_2970 0.15 -0.5
682,891 - 11338 mRNA_2970 0.17 -1.7
682,912 + 11338 mRNA_2970 0.19 +0.9
683,050 + 11338 mRNA_2970 0.29 +1.0
683,199 - 11338 mRNA_2970 0.40 +0.4
683,290 + 11338 mRNA_2970 0.46 +1.7
683,293 - 11338 mRNA_2970 0.47 +0.0
683,302 + 11338 mRNA_2970 0.47 +1.1
683,322 - 11338 mRNA_2970 0.49 -0.2
683,407 - 11338 mRNA_2970 0.55 +0.1
683,407 - 11338 mRNA_2970 0.55 +1.6
683,408 - 11338 mRNA_2970 0.55 -0.9
683,421 + 11338 mRNA_2970 0.56 -0.1
683,429 - 11338 mRNA_2970 0.56 -0.3
683,595 - 11338 mRNA_2970 0.68 +1.5
683,752 + 11338 mRNA_2970 0.80 -0.3
683,787 + 11338 mRNA_2970 0.82 +0.7
683,795 - 11338 mRNA_2970 0.83 +0.3
683,798 + 11338 mRNA_2970 0.83 -2.7
683,844 - 11338 mRNA_2970 0.86 +0.2
683,862 + 11338 mRNA_2970 0.88 -0.3
683,865 - 11338 mRNA_2970 0.88 +2.0
683,896 - +2.6
684,027 - +0.3
684,083 + +0.7
684,294 - 11339 mRNA_2971 0.10 -0.4
684,354 + 11339 mRNA_2971 0.14 +0.6
684,498 + 11339 mRNA_2971 0.22 +0.3
684,604 + 11339 mRNA_2971 0.28 +0.4
684,633 + 11339 mRNA_2971 0.30 +0.3
684,642 - 11339 mRNA_2971 0.30 +0.9
684,653 - 11339 mRNA_2971 0.31 -0.2
684,673 + 11339 mRNA_2971 0.32 +0.0
684,778 + 11339 mRNA_2971 0.38 -1.8
684,788 - 11339 mRNA_2971 0.39 -1.2
684,816 - 11339 mRNA_2971 0.40 +0.8
684,816 - 11339 mRNA_2971 0.40 -1.6
684,819 + 11339 mRNA_2971 0.40 -1.1
684,926 + 11339 mRNA_2971 0.46 +1.2
684,968 - 11339 mRNA_2971 0.49 +0.2
685,026 - 11339 mRNA_2971 0.52 -0.1
685,026 - 11339 mRNA_2971 0.52 -1.3
685,029 - 11339 mRNA_2971 0.52 -1.9

Or see this region's nucleotide sequence