Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2986

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11353 and 11354 are separated by 504 nucleotides11354 and 11355 are separated by 100 nucleotides mRNA_2985: 11353 - KOG1203 Predicted dehydrogenase, at 12,654 to 13,709 11353 mRNA_2986: 11354 - K19176 FAAH2 fatty acid amide hydrolase 2, at 14,214 to 16,255 11354 mRNA_2987: 11355 - HMMPfam-NmrA-like family-PF05368,SUPERFAMILY--SSF51735, at 16,356 to 17,605 11355

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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13,477 + 11353 mRNA_2985 0.78 +1.5
13,546 + 11353 mRNA_2985 0.84 -0.6
13,885 + -0.9
13,907 - +0.0
13,934 - +1.2
14,076 - -0.1
14,077 - -0.2
14,226 - +1.8
14,237 + -1.0
14,237 + +0.8
14,266 - +0.3
14,358 + +0.5
14,425 - 11354 mRNA_2986 0.10 +2.5
14,538 + 11354 mRNA_2986 0.16 +0.5
14,547 + 11354 mRNA_2986 0.16 -1.6
14,547 + 11354 mRNA_2986 0.16 +1.1
14,680 + 11354 mRNA_2986 0.23 -0.4
14,706 + 11354 mRNA_2986 0.24 -0.5
14,859 + 11354 mRNA_2986 0.32 +1.4
15,153 + 11354 mRNA_2986 0.46 -0.1
15,154 - 11354 mRNA_2986 0.46 +0.8
15,241 + 11354 mRNA_2986 0.50 -0.2
15,301 - 11354 mRNA_2986 0.53 +0.4
15,407 + 11354 mRNA_2986 0.58 +2.6
15,452 + 11354 mRNA_2986 0.61 -0.6
15,471 - 11354 mRNA_2986 0.62 +1.8
15,479 + 11354 mRNA_2986 0.62 -1.0
15,544 + 11354 mRNA_2986 0.65 -0.5
16,047 - 11354 mRNA_2986 0.90 +0.7
16,304 - -0.1
16,313 + -0.7
16,325 - +0.7
16,332 - -1.4
16,336 - -0.5
16,345 - +0.5
16,371 + -2.4
16,392 + +0.5
16,407 - +0.9
16,417 - +1.7
16,418 + +0.0
16,420 + +0.1
16,475 + +0.3
16,479 + +0.7
16,488 - 11355 mRNA_2987 0.11 -1.8
16,520 - 11355 mRNA_2987 0.13 +0.1
16,530 - 11355 mRNA_2987 0.14 +1.2
16,605 - 11355 mRNA_2987 0.20 +0.0
16,617 + 11355 mRNA_2987 0.21 +0.8
16,627 - 11355 mRNA_2987 0.22 +0.3
16,630 - 11355 mRNA_2987 0.22 +1.1
16,631 - 11355 mRNA_2987 0.22 -0.7
16,647 + 11355 mRNA_2987 0.23 +0.1
16,650 - 11355 mRNA_2987 0.24 -0.4
16,778 + 11355 mRNA_2987 0.34 +1.4
16,798 + 11355 mRNA_2987 0.35 +1.4
16,807 - 11355 mRNA_2987 0.36 +0.7
16,809 + 11355 mRNA_2987 0.36 -0.5
16,814 + 11355 mRNA_2987 0.37 +0.5
16,822 + 11355 mRNA_2987 0.37 +0.1
16,877 + 11355 mRNA_2987 0.42 +1.5
17,017 - 11355 mRNA_2987 0.53 +0.4
17,053 - 11355 mRNA_2987 0.56 +1.4
17,097 + 11355 mRNA_2987 0.59 +0.4
17,100 - 11355 mRNA_2987 0.60 +0.2
17,241 + 11355 mRNA_2987 0.71 -0.3

Or see this region's nucleotide sequence