Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3011

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11379 and 11380 are separated by 429 nucleotides mRNA_3011: 11379 - K19177 NUS1 dehydrodolichyl diphosphate syntase complex subunit NUS1, at 71,270 to 72,413 11379 mRNA_3012: 11380 - K06269 PPP1C serine/threonine-protein phosphatase PP1 catalytic subunit, at 72,843 to 74,660 11380

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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70,342 - -0.2
70,355 + +0.9
70,487 + +0.1
70,490 - -0.8
70,598 - +0.6
70,782 + -1.5
70,819 - +0.4
70,951 + +0.9
71,081 + +0.1
71,126 + +0.5
71,126 + +0.2
71,199 + +1.1
71,210 - -0.1
71,220 + +1.1
71,234 - -0.2
72,484 - +1.4
72,681 - +1.7
72,681 - -0.8
72,688 - +0.7
72,715 - -1.5
72,901 + -1.3
72,950 - +0.4
72,958 - +1.1
72,984 - +0.5

Or see this region's nucleotide sequence