Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3045

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11413 and 11414 are separated by 370 nucleotides mRNA_3045: 11413 - Hypothetical Protein, at 182,948 to 183,820 11413 mRNA_3046: 11414 - Hypothetical Protein, at 184,191 to 185,834 11414

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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181,961 - +0.0
182,153 - +1.5
182,254 + -0.2
182,663 - -0.7
182,791 + +0.4
182,864 - +0.7
182,991 + -0.3
183,151 + 11413 mRNA_3045 0.23 -1.0
183,154 - 11413 mRNA_3045 0.24 +1.2
183,180 + 11413 mRNA_3045 0.27 +2.1
183,291 - 11413 mRNA_3045 0.39 +0.7
183,315 - 11413 mRNA_3045 0.42 -0.4
183,335 - 11413 mRNA_3045 0.44 -1.1
183,508 - 11413 mRNA_3045 0.64 +0.8
183,524 - 11413 mRNA_3045 0.66 -0.2
183,585 - 11413 mRNA_3045 0.73 -0.1
183,607 + 11413 mRNA_3045 0.75 +1.0
183,631 + 11413 mRNA_3045 0.78 +0.5
183,634 + 11413 mRNA_3045 0.79 +0.8
183,656 - 11413 mRNA_3045 0.81 +0.8
183,657 + 11413 mRNA_3045 0.81 +1.6
183,676 - 11413 mRNA_3045 0.83 +0.0
183,699 + 11413 mRNA_3045 0.86 +1.0
183,704 + 11413 mRNA_3045 0.87 +0.4
183,715 + 11413 mRNA_3045 0.88 +0.2
184,491 + 11414 mRNA_3046 0.18 +1.8
184,520 - 11414 mRNA_3046 0.20 -0.4
184,601 + 11414 mRNA_3046 0.25 +1.6
184,798 - 11414 mRNA_3046 0.37 -0.3

Or see this region's nucleotide sequence