Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3057

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11424 and 11425 are separated by 409 nucleotides11425 and 11426 are separated by 300 nucleotides mRNA_3056: 11424 - K11290 SET, TAF1, I2PP2A template-activating factor I, at 210,409 to 211,861 11424 mRNA_3057: 11425 - K02216 CHK1 serine/threonine-protein kinase Chk1, at 212,271 to 214,660 11425 mRNA_3058: 11426 - Hypothetical Protein, at 214,961 to 216,563 11426

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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211,331 + 11424 mRNA_3056 0.63 +0.3
211,453 - 11424 mRNA_3056 0.72 -0.3
211,457 + 11424 mRNA_3056 0.72 +1.2
211,472 + 11424 mRNA_3056 0.73 -0.6
211,581 - 11424 mRNA_3056 0.81 -1.3
211,599 - 11424 mRNA_3056 0.82 +0.8
211,599 - 11424 mRNA_3056 0.82 -2.6
211,599 - 11424 mRNA_3056 0.82 +0.8
211,602 - 11424 mRNA_3056 0.82 +1.1
211,766 - +0.2
211,769 + +0.6
211,892 + +0.7
211,898 - -1.9
211,902 + +0.4
211,903 - +0.4
211,920 + +0.3
211,928 + +1.8
211,929 + -1.2
212,035 - -0.5
212,045 - +2.1
212,054 + +0.1
212,059 + +1.0
212,211 - -0.8
212,224 + -0.2
212,226 + -0.6
212,274 - +1.5
212,332 + -0.1
212,334 + +0.2
212,336 - +2.1
212,336 - +1.5
212,339 - +0.1
212,361 + +0.6
212,494 + +0.4
212,506 - -1.9
212,604 - 11425 mRNA_3057 0.14 +0.2
212,705 - 11425 mRNA_3057 0.18 +0.5
212,748 + 11425 mRNA_3057 0.20 +0.3
212,802 + 11425 mRNA_3057 0.22 -2.3
212,941 + 11425 mRNA_3057 0.28 -0.1
213,090 - 11425 mRNA_3057 0.34 -0.4
213,116 - 11425 mRNA_3057 0.35 +1.9
213,129 - 11425 mRNA_3057 0.36 +0.0
213,470 + 11425 mRNA_3057 0.50 +0.2
213,496 + 11425 mRNA_3057 0.51 +0.0
213,652 + 11425 mRNA_3057 0.58 -0.0
213,782 - 11425 mRNA_3057 0.63 -1.0
213,807 + 11425 mRNA_3057 0.64 +2.2
213,813 - 11425 mRNA_3057 0.65 +0.4
213,814 - 11425 mRNA_3057 0.65 +1.3
213,989 - 11425 mRNA_3057 0.72 +0.8
213,994 + 11425 mRNA_3057 0.72 +1.4
214,072 + 11425 mRNA_3057 0.75 +1.9
214,224 - 11425 mRNA_3057 0.82 -1.7
214,238 - 11425 mRNA_3057 0.82 +1.0
214,243 + 11425 mRNA_3057 0.83 +0.3
214,523 + -0.5
214,665 + -0.2
214,696 + -0.1
214,932 + +1.1
214,987 + +0.1
214,988 + +1.3
215,019 + -0.8
215,262 - 11426 mRNA_3058 0.19 +0.8
215,363 - 11426 mRNA_3058 0.25 -0.5
215,509 + 11426 mRNA_3058 0.34 +0.8
215,589 - 11426 mRNA_3058 0.39 +2.1
215,589 - 11426 mRNA_3058 0.39 +1.7
215,589 - 11426 mRNA_3058 0.39 -0.1
215,589 - 11426 mRNA_3058 0.39 +0.4
215,595 + 11426 mRNA_3058 0.40 +0.1
215,643 + 11426 mRNA_3058 0.43 +0.6

Or see this region's nucleotide sequence