Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3062

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11429 and 11430 are separated by 350 nucleotides11430 and 11431 are separated by 192 nucleotides mRNA_3061: 11429 - BLAST putative protein [Melanopsichium pennsylvanicum 4], at 221,802 to 224,881 11429 mRNA_3062: 11430 - SUPERFAMILY--SSF49899, at 225,232 to 227,100 11430 mRNA_3063: 11431 - Hypothetical Protein, at 227,293 to 229,777 11431

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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224,567 - 11429 mRNA_3061 0.90 +1.9
224,586 + +2.3
224,587 - +0.2
224,626 - +0.2
224,700 + +0.8
224,815 + +0.9
224,822 - -0.2
224,847 + -0.4
224,854 - +0.2
224,866 + +2.4
224,872 + -1.7
224,957 + +2.4
225,033 + -0.3
225,103 - +0.4
225,135 - +0.0
225,138 + +1.0
225,140 + -0.4
225,140 - -1.9
225,142 + +0.4
225,146 + +0.7
225,147 + +0.2
225,148 + -0.2
225,158 + +2.1
225,264 + -1.2
225,334 - +1.7
225,340 - +0.7
225,347 + +1.5
225,450 - 11430 mRNA_3062 0.12 -1.2
225,473 + 11430 mRNA_3062 0.13 +0.6
225,555 + 11430 mRNA_3062 0.17 -0.8
225,594 - 11430 mRNA_3062 0.19 +2.1
225,610 - 11430 mRNA_3062 0.20 -0.5
225,610 + 11430 mRNA_3062 0.20 +0.0
225,636 - 11430 mRNA_3062 0.22 +0.1
225,644 + 11430 mRNA_3062 0.22 -0.4
225,646 - 11430 mRNA_3062 0.22 -0.5
225,651 - 11430 mRNA_3062 0.22 +0.6
225,705 + 11430 mRNA_3062 0.25 +1.8
225,706 - 11430 mRNA_3062 0.25 -0.3
225,748 - 11430 mRNA_3062 0.28 -0.5
225,761 - 11430 mRNA_3062 0.28 +0.1
225,840 + 11430 mRNA_3062 0.33 +2.0
225,867 + 11430 mRNA_3062 0.34 +0.0
225,880 + 11430 mRNA_3062 0.35 +0.4
225,905 - 11430 mRNA_3062 0.36 +1.8
226,065 - 11430 mRNA_3062 0.45 -0.1
226,070 - 11430 mRNA_3062 0.45 +0.5
226,071 + 11430 mRNA_3062 0.45 -0.1
226,071 + 11430 mRNA_3062 0.45 -2.2
226,278 - 11430 mRNA_3062 0.56 +1.6
226,346 - 11430 mRNA_3062 0.60 +1.4
226,346 - 11430 mRNA_3062 0.60 -0.4
226,460 + 11430 mRNA_3062 0.66 +0.8
226,593 + 11430 mRNA_3062 0.73 +0.3
226,680 + 11430 mRNA_3062 0.77 +0.1
226,730 - 11430 mRNA_3062 0.80 +0.9
226,765 - 11430 mRNA_3062 0.82 -0.8
226,769 - 11430 mRNA_3062 0.82 +0.7
226,769 + 11430 mRNA_3062 0.82 +0.3
226,777 + 11430 mRNA_3062 0.83 -3.6
226,865 + 11430 mRNA_3062 0.87 +0.1
226,915 - -1.9
226,915 - +0.0
226,925 + +1.2
227,049 - -0.5
227,068 - -0.2
227,164 - +2.3
227,164 - -0.2
227,188 - -0.0
227,201 - -0.3
227,220 + -0.1
227,240 + +0.9
227,250 - +1.2
227,339 + -0.7
227,618 + 11431 mRNA_3063 0.13 -0.8
227,657 - 11431 mRNA_3063 0.15 +0.9
227,813 - 11431 mRNA_3063 0.21 +1.3
227,938 + 11431 mRNA_3063 0.26 +3.5
228,096 - 11431 mRNA_3063 0.32 -0.2

Or see this region's nucleotide sequence