Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3063

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11430 and 11431 are separated by 192 nucleotides11431 and 11432 are separated by 82 nucleotides mRNA_3062: 11430 - SUPERFAMILY--SSF49899, at 225,232 to 227,100 11430 mRNA_3063: 11431 - Hypothetical Protein, at 227,293 to 229,777 11431 mRNA_3064: 11432 - K17617 CTDNEP1, DULLARD, NEM1 CTD nuclear envelope phosphatase 1, at 229,860 to 230,752 11432

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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226,346 - 11430 mRNA_3062 0.60 +1.4
226,346 - 11430 mRNA_3062 0.60 -0.4
226,460 + 11430 mRNA_3062 0.66 +0.8
226,593 + 11430 mRNA_3062 0.73 +0.3
226,680 + 11430 mRNA_3062 0.77 +0.1
226,730 - 11430 mRNA_3062 0.80 +0.9
226,765 - 11430 mRNA_3062 0.82 -0.8
226,769 - 11430 mRNA_3062 0.82 +0.7
226,769 + 11430 mRNA_3062 0.82 +0.3
226,777 + 11430 mRNA_3062 0.83 -3.6
226,865 + 11430 mRNA_3062 0.87 +0.1
226,915 - -1.9
226,915 - +0.0
226,925 + +1.2
227,049 - -0.5
227,068 - -0.2
227,164 - +2.3
227,164 - -0.2
227,188 - -0.0
227,201 - -0.3
227,220 + -0.1
227,240 + +0.9
227,250 - +1.2
227,339 + -0.7
227,618 + 11431 mRNA_3063 0.13 -0.8
227,657 - 11431 mRNA_3063 0.15 +0.9
227,813 - 11431 mRNA_3063 0.21 +1.3
227,938 + 11431 mRNA_3063 0.26 +3.5
228,096 - 11431 mRNA_3063 0.32 -0.2
228,261 - 11431 mRNA_3063 0.39 +0.5
228,417 - 11431 mRNA_3063 0.45 +2.0
228,474 - 11431 mRNA_3063 0.48 -1.0
228,491 - 11431 mRNA_3063 0.48 +2.6
228,792 + 11431 mRNA_3063 0.60 +1.2
228,961 + 11431 mRNA_3063 0.67 -0.7
228,978 - 11431 mRNA_3063 0.68 +0.4
229,109 - 11431 mRNA_3063 0.73 -0.6
229,135 + 11431 mRNA_3063 0.74 -0.7
229,428 + 11431 mRNA_3063 0.86 -1.0
229,618 + -0.2
229,737 + +0.4
229,737 + +0.7
229,829 - +0.2
229,909 - +0.2
229,958 + 11432 mRNA_3064 0.11 +0.1
229,985 - 11432 mRNA_3064 0.14 +1.6
229,999 - 11432 mRNA_3064 0.16 +0.4
230,450 + 11432 mRNA_3064 0.66 +0.5
230,730 - +0.8

Or see this region's nucleotide sequence