Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3080

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11447 and 11448 are separated by 272 nucleotides11448 and 11449 are separated by 691 nucleotides mRNA_3079: 11447 - HMMPfam-DNA polymerase Ligase (LigD)-PF13298, at 270,913 to 272,289 11447 mRNA_3080: 11448 - HMMPfam-Ferritin-like domain-PF13668,SUPERFAMILY--SSF47240, at 272,562 to 274,087 11448 mRNA_3081: 11449 - KOG0446 Vacuolar sorting protein VPS1, dynamin, and related proteins, at 274,779 to 278,054 11449

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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271,602 - 11447 mRNA_3079 0.50 +0.4
271,625 + 11447 mRNA_3079 0.52 -1.2
271,650 - 11447 mRNA_3079 0.54 -0.9
271,669 - 11447 mRNA_3079 0.55 +1.4
271,710 - 11447 mRNA_3079 0.58 +0.0
271,710 - 11447 mRNA_3079 0.58 -0.3
271,757 - 11447 mRNA_3079 0.61 +0.3
271,906 + 11447 mRNA_3079 0.72 +1.2
271,953 + 11447 mRNA_3079 0.76 +1.1
272,120 - 11447 mRNA_3079 0.88 +1.5
272,174 + +1.2
272,189 + -0.1
272,331 + -0.7
272,339 + +1.3
272,466 - +0.0
272,493 - +3.0
272,581 + -0.9
272,620 - +1.8
272,903 - 11448 mRNA_3080 0.22 +1.9
273,232 - 11448 mRNA_3080 0.44 +0.1
273,328 - 11448 mRNA_3080 0.50 +0.6
273,384 - 11448 mRNA_3080 0.54 +1.6
273,503 - 11448 mRNA_3080 0.62 -0.2
273,513 + 11448 mRNA_3080 0.62 +1.1
273,519 - 11448 mRNA_3080 0.63 +3.4
273,830 + 11448 mRNA_3080 0.83 -0.3
273,833 + 11448 mRNA_3080 0.83 +0.1
273,934 + 11448 mRNA_3080 0.90 +0.0
274,113 + -0.7
274,113 + +0.3
274,122 + -0.4
274,246 + +1.0
274,257 + +1.9
274,259 + +0.3
274,259 - +0.9
274,267 + +0.0
274,272 + +1.2
274,273 + +0.6
274,284 + +1.2
274,285 - +1.7
274,285 - +1.4
274,286 - +1.9
274,295 + +0.7
274,295 + +0.2
274,296 - +0.3
274,301 + +0.8
274,332 + -0.4
274,356 - +0.1
274,357 + -0.3
274,357 + +1.0
274,393 - +0.3
274,393 - +0.1
274,413 + -0.3
274,417 + -0.8
274,421 - -0.5
274,433 - +2.7
274,437 + -0.0
274,452 + +2.6
274,452 - +0.6
274,536 + +0.7
274,542 - +1.1
274,545 + +2.3
274,568 - +1.0
274,587 + +0.1
274,695 + -0.1
274,697 + +1.4
274,807 + +1.1
274,815 - +2.1
274,827 - +0.2
274,836 - -0.1
274,867 - +0.3
274,952 - +0.2
274,983 - +0.3
275,000 + +0.0

Or see this region's nucleotide sequence