Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3088

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11455 and 11456 are separated by 192 nucleotides11456 and 11457 overlap by 8 nucleotides mRNA_3087: 11455 - HMMPfam-haloacid dehalogenase-like hydrolase-PF12710,SUPERFAMILY--SSF56784,TIGRFAM-HAD-SF-IB HAD phosphoserine phosphatase-like hydrolase, family IB-TIGR01488,TIGRFAM-DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase-TIGR01489, at 289,552 to 290,619 11455 mRNA_3088: 11456 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 290,812 to 293,862 11456 mRNA_3089: 11457 - BLAST Rho GTPase-activating protein 30 [Larimichthys crocea], at 293,855 to 294,427 11457

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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289,983 + 11455 mRNA_3087 0.40 +0.3
290,096 + 11455 mRNA_3087 0.51 -0.0
290,119 + 11455 mRNA_3087 0.53 +1.2
290,295 - 11455 mRNA_3087 0.70 -1.5
290,411 - 11455 mRNA_3087 0.80 -3.0
290,435 + 11455 mRNA_3087 0.83 +0.0
290,443 + 11455 mRNA_3087 0.83 +1.3
290,452 + 11455 mRNA_3087 0.84 -0.2
290,542 - -0.3
290,551 + -0.0
290,561 - -0.1
290,565 + +0.3
290,570 - +1.5
290,573 + +0.4
290,576 + +1.7
290,581 + +0.3
290,620 - -0.2
290,622 + -2.3
290,647 - +1.6
290,657 - -0.9
290,659 + +0.4
290,660 + -0.5
290,663 - -1.2
290,665 - -0.3
290,667 + +2.0
290,667 - +1.4
290,676 + +1.7
290,685 + +0.7
290,686 - +1.7
290,686 - -0.1
290,687 - +0.7
290,689 + +1.9
290,689 + -1.7
290,689 + +1.5
290,690 - +1.1
290,693 - +0.2
290,694 + -0.6
290,699 - +0.1
290,706 + -1.0
290,706 + +1.2
290,707 - +0.6
290,711 - -0.1
290,717 + -0.0
290,735 - +1.0
290,742 + +1.8
290,742 + +2.2
290,745 + +0.3
290,839 + +1.1
290,858 + -0.3
290,858 - +1.3
290,866 - -0.2
290,905 - +0.3
290,905 - +0.3
290,910 - +0.5
290,915 + +0.4
291,012 - +0.9
291,027 + +0.7
291,110 + +0.0
291,160 + 11456 mRNA_3088 0.11 +0.7
291,310 - 11456 mRNA_3088 0.16 +0.1
291,457 + 11456 mRNA_3088 0.21 -1.5
291,467 + 11456 mRNA_3088 0.21 +1.3
291,745 + 11456 mRNA_3088 0.31 +0.7
291,765 + 11456 mRNA_3088 0.31 +1.1
291,896 - 11456 mRNA_3088 0.36 -0.8
291,934 + 11456 mRNA_3088 0.37 -1.4
292,218 + 11456 mRNA_3088 0.46 -1.8
292,365 + 11456 mRNA_3088 0.51 +2.4
292,577 - 11456 mRNA_3088 0.58 -1.5
292,673 + 11456 mRNA_3088 0.61 +0.2
292,916 - 11456 mRNA_3088 0.69 +0.1
292,917 + 11456 mRNA_3088 0.69 -1.1
293,056 - 11456 mRNA_3088 0.74 +1.1
293,073 + 11456 mRNA_3088 0.74 +1.1
293,362 + 11456 mRNA_3088 0.84 +0.4
293,477 - 11456 mRNA_3088 0.87 -0.3
294,052 - 11457 mRNA_3089 0.34 -0.1
294,064 - 11457 mRNA_3089 0.36 -1.3
294,079 + 11457 mRNA_3089 0.39 -1.1
294,167 + 11457 mRNA_3089 0.54 +1.2
294,209 - 11457 mRNA_3089 0.62 +0.3
294,360 - 11457 mRNA_3089 0.88 +0.2
294,390 + -0.1
294,391 - -0.4
294,542 - -0.3
294,550 + +0.1
294,550 - -0.4
294,550 - +0.4
294,557 + +0.2
294,562 + +0.1
294,563 + -0.0
294,564 - +0.3
294,567 - -0.2
294,595 + +1.2
294,596 - -0.2
294,819 - -1.1
294,833 - +1.5
294,847 + +0.8

Or see this region's nucleotide sequence