Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3098

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11465 and 11466 are separated by 198 nucleotides11466 and 11467 are separated by 60 nucleotides mRNA_3097: 11465 - K00591 COQ3 polyprenyldihydroxybenzoate methyltransferase / 3-demethylubiquinol 3-O-methyltransferase, at 311,599 to 312,739 11465 mRNA_3098: 11466 - ProSiteProfiles-F-box domain profile.-PS50181,SUPERFAMILY--SSF81383, at 312,938 to 315,396 11466 mRNA_3099: 11467 - Hypothetical Protein, at 315,457 to 316,238 11467

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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312,026 - 11465 mRNA_3097 0.37 +0.3
312,032 + 11465 mRNA_3097 0.38 -2.0
312,136 + 11465 mRNA_3097 0.47 +0.1
312,233 + 11465 mRNA_3097 0.56 +2.2
312,462 + 11465 mRNA_3097 0.76 -1.0
312,462 + 11465 mRNA_3097 0.76 +0.9
312,469 + 11465 mRNA_3097 0.76 +0.3
312,472 - 11465 mRNA_3097 0.77 -0.3
312,597 - 11465 mRNA_3097 0.87 +1.3
312,803 + +0.6
312,910 + +0.3
312,913 + +0.9
312,935 + -0.2
312,980 - +2.1
313,058 + +0.7
313,212 - 11466 mRNA_3098 0.11 +0.1
313,214 + 11466 mRNA_3098 0.11 +0.4
313,337 + 11466 mRNA_3098 0.16 -0.2
313,452 + 11466 mRNA_3098 0.21 +2.0
313,466 + 11466 mRNA_3098 0.21 +0.2
313,491 + 11466 mRNA_3098 0.22 +1.3
313,680 + 11466 mRNA_3098 0.30 +0.8
313,780 - 11466 mRNA_3098 0.34 +2.4
314,080 + 11466 mRNA_3098 0.46 +0.2
314,165 - 11466 mRNA_3098 0.50 +0.1
314,190 - 11466 mRNA_3098 0.51 +1.9
314,203 + 11466 mRNA_3098 0.51 -1.5
314,324 - 11466 mRNA_3098 0.56 +0.0
314,347 + 11466 mRNA_3098 0.57 -1.0
314,361 - 11466 mRNA_3098 0.58 -0.6
314,372 - 11466 mRNA_3098 0.58 +1.9
314,400 + 11466 mRNA_3098 0.59 +0.7
314,496 + 11466 mRNA_3098 0.63 +0.7
314,510 + 11466 mRNA_3098 0.64 -0.2
314,655 - 11466 mRNA_3098 0.70 +1.6
314,854 + 11466 mRNA_3098 0.78 -0.7
314,886 + 11466 mRNA_3098 0.79 +0.4
314,952 + 11466 mRNA_3098 0.82 +1.1
315,276 - -0.9
315,441 - -2.3
315,450 + -0.8
315,500 - -0.3
315,704 + 11467 mRNA_3099 0.32 +0.2
315,716 - 11467 mRNA_3099 0.33 +1.9
315,721 - 11467 mRNA_3099 0.34 -0.1
315,728 + 11467 mRNA_3099 0.35 +2.2
316,014 + 11467 mRNA_3099 0.71 +0.0
316,303 - -1.0

Or see this region's nucleotide sequence