Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3141

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11508 and 11509 are separated by 63 nucleotides mRNA_3140: 11508 - BLAST peptide release factor [Melanopsichium pennsylvanicum 4], at 411,347 to 412,227 11508 mRNA_3141: 11509 - HMMPfam-Proline-rich nuclear receptor coactivator-PF15365, at 412,291 to 413,595 11509

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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411,293 - -1.3
411,293 + -0.6
411,295 + +1.9
411,301 - +1.2
411,303 + +0.2
411,310 + +0.7
411,317 - +0.1
411,333 + -0.1
411,381 - +0.4
411,394 + +1.9
411,422 - +1.7
411,435 - 11508 mRNA_3140 0.10 -0.2
411,435 - 11508 mRNA_3140 0.10 -0.6
411,436 + 11508 mRNA_3140 0.10 +2.0
411,437 + 11508 mRNA_3140 0.10 -0.1
411,449 - 11508 mRNA_3140 0.12 +1.3
411,454 + 11508 mRNA_3140 0.12 -0.5
411,588 - 11508 mRNA_3140 0.27 -1.9
411,595 - 11508 mRNA_3140 0.28 -0.1
411,745 + 11508 mRNA_3140 0.45 +1.0
411,770 - 11508 mRNA_3140 0.48 +1.1
411,815 + 11508 mRNA_3140 0.53 +0.8
411,869 + 11508 mRNA_3140 0.59 +0.6
411,872 + 11508 mRNA_3140 0.60 -1.1
411,881 + 11508 mRNA_3140 0.61 -0.0
411,883 - 11508 mRNA_3140 0.61 -0.9
411,883 + 11508 mRNA_3140 0.61 -0.5
411,900 + 11508 mRNA_3140 0.63 +0.7
411,904 - 11508 mRNA_3140 0.63 -0.2
412,004 + 11508 mRNA_3140 0.75 +0.1
412,011 - 11508 mRNA_3140 0.75 +1.2
412,022 - 11508 mRNA_3140 0.77 -0.6
412,036 + 11508 mRNA_3140 0.78 +0.1
412,068 + 11508 mRNA_3140 0.82 +0.2
412,138 - 11508 mRNA_3140 0.90 +0.4
412,163 - +0.3
412,163 - -0.3
412,163 - +1.2
412,177 + +1.8
412,177 + +1.5
412,183 - -0.2
412,186 - +0.0
412,305 - -0.6
412,315 - +1.1
412,317 - +0.8
412,323 + -0.1
412,351 - +0.5
412,352 + +0.2
412,371 + -1.0
412,452 + 11509 mRNA_3141 0.12 +2.8
412,454 - 11509 mRNA_3141 0.12 -0.2
412,494 - 11509 mRNA_3141 0.16 +0.2
412,611 + 11509 mRNA_3141 0.25 +0.3
412,611 - 11509 mRNA_3141 0.25 +0.9
412,611 + 11509 mRNA_3141 0.25 +1.7
412,636 - 11509 mRNA_3141 0.26 +1.9
412,638 + 11509 mRNA_3141 0.27 -0.3
412,640 - 11509 mRNA_3141 0.27 +1.7
412,641 - 11509 mRNA_3141 0.27 -0.2
412,641 + 11509 mRNA_3141 0.27 +0.7
412,650 - 11509 mRNA_3141 0.28 +0.3
412,770 + 11509 mRNA_3141 0.37 +1.9
412,777 - 11509 mRNA_3141 0.37 -0.4
412,782 - 11509 mRNA_3141 0.38 +0.3
412,787 + 11509 mRNA_3141 0.38 +0.0
412,791 + 11509 mRNA_3141 0.38 +0.2
412,793 - 11509 mRNA_3141 0.38 +0.6
412,797 + 11509 mRNA_3141 0.39 -0.4
412,802 - 11509 mRNA_3141 0.39 +1.8
412,803 - 11509 mRNA_3141 0.39 +0.5
412,816 + 11509 mRNA_3141 0.40 +0.4
412,817 + 11509 mRNA_3141 0.40 +0.9
412,953 + 11509 mRNA_3141 0.51 -0.7
412,957 - 11509 mRNA_3141 0.51 -0.0
413,085 + 11509 mRNA_3141 0.61 +1.1
413,237 - 11509 mRNA_3141 0.72 -1.0
413,382 - 11509 mRNA_3141 0.84 +1.8
413,386 - 11509 mRNA_3141 0.84 +0.9
413,388 + 11509 mRNA_3141 0.84 +2.4
413,528 - -0.3
413,533 + +0.6
413,743 + +0.7
413,838 - +0.5
413,845 + -0.4
414,131 + +1.3
414,259 - +1.4
414,265 - -0.1
414,390 - -0.8
414,391 + -0.2
414,394 - +0.1
414,402 + +1.5
414,411 - +1.2
414,417 + +0.5
414,431 + +0.3
414,437 + -0.2
414,438 - -0.2
414,442 - +0.0
414,444 - -0.1
414,480 - +0.5
414,488 + +0.6
414,488 + -0.0
414,493 + -0.4
414,501 - +0.5
414,509 + +0.3
414,529 - -0.1
414,529 - +0.8
414,529 - +0.5
414,558 - +0.5
414,571 - +0.4
414,571 + -0.1
414,571 - +1.5
414,578 + +1.4
414,578 + -0.3
414,578 + -0.7
414,580 - +1.2
414,581 + +0.9
414,583 - -0.6
414,590 - -0.2

Or see this region's nucleotide sequence