Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3153

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11520 and 11521 are separated by 230 nucleotides11521 and 11522 are separated by 295 nucleotides mRNA_3152: 11520 - Interpro PET assembly of cytochrome c oxidase, mitochondrial, at 438,780 to 439,151 11520 mRNA_3153: 11521 - BLAST serine proline rich protein [Moniliophthora rorer..., at 439,382 to 440,661 11521 mRNA_3154: 11522 - K14831 MAK16 protein MAK16, at 440,957 to 442,475 11522

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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438,414 - +1.1
438,426 - -0.4
438,436 - +0.9
438,446 + -0.4
438,469 - +1.7
438,471 - +2.8
438,472 + -0.5
438,478 - -0.6
438,503 + -0.3
438,542 - +1.2
438,552 + -0.2
438,560 - -0.3
438,603 - +0.5
438,612 - -0.4
438,614 - +0.3
438,629 + -0.5
438,643 + +1.2
438,645 + -0.5
438,655 - -1.4
438,662 - -1.5
438,778 - +1.6
438,784 + -1.0
438,844 - 11520 mRNA_3152 0.17 +0.7
438,898 + 11520 mRNA_3152 0.32 -2.4
438,920 + 11520 mRNA_3152 0.38 +2.0
438,952 - 11520 mRNA_3152 0.46 +1.6
439,046 - 11520 mRNA_3152 0.72 +2.1
439,067 - 11520 mRNA_3152 0.77 +0.4
439,080 + 11520 mRNA_3152 0.81 -0.2
439,089 + 11520 mRNA_3152 0.83 -0.5
439,199 - -0.0
439,200 + +2.8
439,201 - +2.1
439,202 + -1.0
439,203 - +0.2
439,203 + +2.1
439,204 + +0.1
439,344 - +1.5
439,350 + +0.7
439,485 + -1.2
439,645 + 11521 mRNA_3153 0.21 +1.8
439,674 + 11521 mRNA_3153 0.23 -1.3
439,785 - 11521 mRNA_3153 0.31 -1.3
439,787 + 11521 mRNA_3153 0.32 +2.0
439,792 - 11521 mRNA_3153 0.32 +0.1
440,096 + 11521 mRNA_3153 0.56 +0.9
440,332 - 11521 mRNA_3153 0.74 +0.6
440,340 + 11521 mRNA_3153 0.75 -0.3
440,495 - 11521 mRNA_3153 0.87 -1.1
440,508 + 11521 mRNA_3153 0.88 -0.3
440,639 - +1.2
440,692 + -2.1
440,928 - +0.6
440,945 - -0.4
440,973 - -0.1
441,230 - 11522 mRNA_3154 0.18 -2.0
441,364 + 11522 mRNA_3154 0.27 -0.5
441,385 + 11522 mRNA_3154 0.28 +1.1
441,487 - 11522 mRNA_3154 0.35 +1.4
441,546 - 11522 mRNA_3154 0.39 -1.1

Or see this region's nucleotide sequence