Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3169

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11537 and 11538 are separated by 647 nucleotides mRNA_3169: 11537 - Hypothetical Protein, at 529 to 1,526 11537 mRNA_3170: 11538 - Hypothetical Protein, at 2,174 to 3,237 11538

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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12 + +1.2
12 + +0.8
15 + +1.1
16 + +1.6
18 + +0.1
22 + +0.8
25 + +1.0
57 - -0.5
61 - +0.3
62 + -0.5
62 + +0.7
66 + +0.4
72 + +0.5
72 + +0.3
72 + -0.6
75 + +1.3
78 - +0.5
105 + +0.5
110 - -1.1
114 + +0.1
115 + -1.0
118 + +1.7
122 + +0.5
122 - +0.9
124 + +0.8
135 + +0.4
147 + -0.1
157 + +2.4
161 + +0.8
168 + -2.7
174 + +0.2
177 - -0.3
228 + -0.5
247 + +1.3
252 - -0.8
253 - +1.9
255 + +0.8
258 + +0.0
264 - +0.3
269 + +0.0
269 - +0.7
274 + -0.3
275 - +1.2
277 + -0.4
280 + -1.5
280 + +1.8
283 - +0.6
285 - -0.4
287 + +0.3
287 + +2.3
288 + +0.6
292 - +0.1
293 + -0.0
298 + +0.1
305 - +0.1
314 + -0.5
320 + -0.2
368 + +0.6
370 - +0.9
372 + +0.6
382 + +2.0
384 + +1.4
391 + +1.4
391 - -1.5
397 + +1.5
397 - -0.5
402 + +2.0
405 + +1.0
423 - -2.0
430 + -0.1
440 + +1.2
446 + +0.0
470 + +0.3
524 + +0.4
532 + -0.8
545 - +2.7
557 + +1.2
569 + +1.5
570 - +1.3
583 + -0.1
584 + +1.6
603 - +0.4
603 + +1.1
634 - 11537 mRNA_3169 0.11 +1.2
636 + 11537 mRNA_3169 0.11 +1.4
646 + 11537 mRNA_3169 0.12 +0.8
661 + 11537 mRNA_3169 0.13 +0.0
667 + 11537 mRNA_3169 0.14 +0.3
698 + 11537 mRNA_3169 0.17 +0.1
704 - 11537 mRNA_3169 0.18 -0.3
705 - 11537 mRNA_3169 0.18 +3.2
721 - 11537 mRNA_3169 0.19 -0.1
725 + 11537 mRNA_3169 0.20 -1.1
738 - 11537 mRNA_3169 0.21 +0.5
849 + 11537 mRNA_3169 0.32 +0.6
871 + 11537 mRNA_3169 0.34 +0.9
883 + 11537 mRNA_3169 0.35 +2.7
894 + 11537 mRNA_3169 0.37 -1.0
895 + 11537 mRNA_3169 0.37 -0.2
922 + 11537 mRNA_3169 0.39 +0.6
965 - 11537 mRNA_3169 0.44 +0.2
1,012 - 11537 mRNA_3169 0.48 +1.7
1,026 + 11537 mRNA_3169 0.50 -0.2
1,026 + 11537 mRNA_3169 0.50 +1.1
1,105 + 11537 mRNA_3169 0.58 +2.6
1,123 + 11537 mRNA_3169 0.60 +0.7
1,141 + 11537 mRNA_3169 0.61 -0.1
1,142 + 11537 mRNA_3169 0.61 +1.4
1,165 + 11537 mRNA_3169 0.64 +1.4
1,174 - 11537 mRNA_3169 0.65 +0.8
1,174 + 11537 mRNA_3169 0.65 +0.4
1,259 + 11537 mRNA_3169 0.73 +2.5
1,265 + 11537 mRNA_3169 0.74 +0.1
1,268 + 11537 mRNA_3169 0.74 +1.1
1,269 - 11537 mRNA_3169 0.74 +0.0
1,288 - 11537 mRNA_3169 0.76 -0.4
1,297 + 11537 mRNA_3169 0.77 -1.8
1,303 - 11537 mRNA_3169 0.78 +0.6
1,399 + 11537 mRNA_3169 0.87 +0.4
1,412 - 11537 mRNA_3169 0.88 -0.9
1,419 - 11537 mRNA_3169 0.89 +0.5
1,423 - 11537 mRNA_3169 0.90 -1.8
1,429 - +0.4
1,453 + +0.6
1,459 + +0.3
1,459 + -0.1
1,460 - -0.4
1,461 + +0.4
1,462 + +0.5
1,467 + +1.1
1,470 - -1.5
1,474 - +0.0
1,485 + +0.1
1,520 + +0.2
1,523 + +0.4
1,531 - +0.3
1,537 + +0.2
1,541 + +2.1
1,562 + +0.4
1,567 + +0.3
1,572 + -0.6
1,582 - -1.1
1,584 - +1.1
1,589 + -0.9
1,596 - +0.4
1,601 - -1.3
1,602 + -0.6
1,605 + +1.3
1,609 + +0.7
1,616 + -0.4
1,636 + +0.3
1,654 + +1.4
1,656 - +1.7
1,666 + +0.2
1,675 - +1.2
1,682 - -0.3
1,697 - +0.7
1,709 + -0.3
1,709 - +0.5
1,711 + +0.3
1,718 - -0.0
1,719 + -0.0
1,722 - +0.4
1,723 + +0.3
1,725 - +0.1
1,725 - +1.1
1,727 + -0.7
1,730 + -1.1
1,731 + +0.5
1,732 + +2.8
1,732 + +0.7
1,734 + -0.1
1,734 + -0.4
1,734 + +0.5
1,739 - -0.5
1,740 + +2.1
1,744 - -0.4
1,747 + +0.1
1,749 + -0.9
1,759 + +0.1
1,759 + +0.7
1,759 + +1.5
1,761 + +0.6
1,763 + -1.1
1,765 + -1.1
1,767 + +2.4
1,769 + -1.4
1,772 + +0.6
1,772 + +1.3
1,774 + +1.4
1,774 + -0.3
1,775 + +0.2
1,776 - +1.1
1,776 + +1.6
1,777 + +0.4
1,778 + +1.8
1,778 - -0.1
1,781 - +0.3
1,783 - +1.1
1,783 - -0.4
1,783 - +0.8
1,783 - +1.5
1,784 + +0.1
1,789 + +2.9
1,789 - -0.1
1,791 + -0.3
1,792 + +0.3
1,793 + +1.7
1,795 + +0.4
1,796 + -0.4
1,796 - +1.4
1,798 + +1.1
1,800 + -0.1
1,801 + -0.2
1,805 + +0.1
1,805 + +1.4
1,807 + +0.9
1,813 - +0.1
1,814 + -0.0
1,814 + +1.0
1,818 - +0.8
1,851 - -0.6
1,874 + +0.6
1,881 - +0.1
1,885 - -0.1
1,891 - -0.4
1,896 - +0.2
1,912 + -0.5
1,912 + +0.5
1,914 - -0.7
1,916 - -0.4
1,917 - +1.3
1,919 + +0.9
1,922 - +1.7
1,923 - +0.9
1,934 - +0.7
1,935 + -0.1
1,938 - -0.1
1,938 - +0.2
1,940 - +0.6
1,941 + -0.4
1,941 + -0.2
1,942 + -0.7
1,943 - -1.7
1,944 + -0.2
1,944 - -0.1
1,945 - +2.2
1,945 + +0.0
1,946 - -0.2
1,947 + +1.1
1,960 - -0.1
1,968 + -0.2
1,980 + +2.3
2,015 + -0.5
2,067 - +0.9
2,081 - +0.2
2,091 + +0.8
2,220 + -1.0
2,229 - +1.5
2,235 - -0.3
2,237 - +0.5
2,242 + -1.0
2,242 - -0.2
2,245 - +1.5
2,248 - +0.7
2,251 + +2.3
2,254 - -0.1
2,261 + -0.5
2,262 - -0.8
2,266 + +1.3
2,268 + -0.4
2,400 + 11538 mRNA_3170 0.21 -0.3
2,401 - 11538 mRNA_3170 0.21 +1.0
2,404 + 11538 mRNA_3170 0.22 -0.6
2,414 + 11538 mRNA_3170 0.23 +0.7
2,420 - 11538 mRNA_3170 0.23 +1.3
2,439 + 11538 mRNA_3170 0.25 -0.2
2,446 + 11538 mRNA_3170 0.26 +2.4
2,470 - 11538 mRNA_3170 0.28 +1.7
2,516 - 11538 mRNA_3170 0.32 -1.0

Or see this region's nucleotide sequence